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Articles published in
PLoS Comput Biol
    September 2021
  1. GOZZI N, Bajardi P, Perra N
    The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout.
    PLoS Comput Biol. 2021;17:e1009346.
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  2. BAUER S, Contreras S, Dehning J, Linden M, et al
    Relaxing restrictions at the pace of vaccination increases freedom and guards against further COVID-19 waves.
    PLoS Comput Biol. 2021;17:e1009288.
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    August 2021
  3. GUERSTEIN S, Romeo-Aznar V, Dekel M, Miron O, et al
    The interplay between vaccination and social distancing strategies affects COVID19 population-level outcomes.
    PLoS Comput Biol. 2021;17:e1009319.
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    July 2021
  4. KERR CC, Stuart RM, Mistry D, Abeysuriya RG, et al
    Covasim: An agent-based model of COVID-19 dynamics and interventions.
    PLoS Comput Biol. 2021;17:e1009149.
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  5. HINCH R, Probert WJM, Nurtay A, Kendall M, et al
    OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing.
    PLoS Comput Biol. 2021;17:e1009146.
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    May 2021
  6. MOORE S, Hill EM, Dyson L, Tildesley MJ, et al
    Modelling optimal vaccination strategy for SARS-CoV-2 in the UK.
    PLoS Comput Biol. 2021;17:e1008849.
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    April 2021
  7. SIKORA M, von Bulow S, Blanc FEC, Gecht M, et al
    Computational epitope map of SARS-CoV-2 spike protein.
    PLoS Comput Biol. 2021;17:e1008790.
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  8. BETTI L, De Francisci Morales G, Gauvin L, Kalimeri K, et al
    Detecting adherence to the recommended childhood vaccination schedule from user-generated content in a US parenting forum.
    PLoS Comput Biol. 2021;17:e1008919.
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    February 2021
  9. ANTIA R, Ahmed H, Bull JJ
    Directed attenuation to enhance vaccine immunity.
    PLoS Comput Biol. 2021;17:e1008602.
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    January 2021
  10. LEE BY, Bartsch SM, Ferguson MC, Wedlock PT, et al
    The value of decreasing the duration of the infectious period of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
    PLoS Comput Biol. 2021;17:e1008470.
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    October 2020
  11. DORIGATTI E, Schubert B
    Graph-theoretical formulation of the generalized epitope-based vaccine design problem.
    PLoS Comput Biol. 2020;16:e1008237.
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  12. HILL EM, Petrou S, Forster H, de Lusignan S, et al
    Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation.
    PLoS Comput Biol. 2020;16:e1008278.
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  13. HOLLINGSWORTH B, Okamoto KW, Lloyd AL
    After the honeymoon, the divorce: Unexpected outcomes of disease control measures against endemic infections.
    PLoS Comput Biol. 2020;16:e1008292.
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    June 2020
  14. YANG W, Lau EHY, Cowling BJ
    Dynamic interactions of influenza viruses in Hong Kong during 1998-2018.
    PLoS Comput Biol. 2020;16:e1007989.
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  15. DUVIGNEAU S, Durr R, Laske T, Bachmann M, et al
    Model-based approach for predicting the impact of genetic modifications on product yield in biopharmaceutical manufacturing-Application to influenza vaccine production.
    PLoS Comput Biol. 2020;16:e1007810.
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  16. CHISHOLM RH, Sonenberg N, Lacey JA, McDonald MI, et al
    Epidemiological consequences of enduring strain-specific immunity requiring repeated episodes of infection.
    PLoS Comput Biol. 2020;16:e1007182.
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    April 2020
  17. PUELMA TOUZEL M, Walczak AM, Mora T
    Inferring the immune response from repertoire sequencing.
    PLoS Comput Biol. 2020;16:e1007873.
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    February 2020
  18. CASTRO LA, Bedford T, Ancel Meyers L
    Early prediction of antigenic transitions for influenza A/H3N2.
    PLoS Comput Biol. 2020;16:e1007683.
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    October 2019
  19. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
    Seasonal influenza: Modelling approaches to capture immunity propagation.
    PLoS Comput Biol. 2019;15:e1007096.
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    September 2019
  20. VENKATRAMANAN S, Chen J, Fadikar A, Gupta S, et al
    Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints.
    PLoS Comput Biol. 2019;15:e1007111.
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  21. BECKER AD, Wesolowski A, Bjornstad ON, Grenfell BT, et al
    Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination.
    PLoS Comput Biol. 2019;15:e1007305.
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    August 2019
  22. HAY JA, Laurie K, White M, Riley S, et al
    Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets.
    PLoS Comput Biol. 2019;15:e1007294.
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    July 2019
  23. BULL JJ, Nuismer SL, Antia R
    Recombinant vector vaccine evolution.
    PLoS Comput Biol. 2019;15:e1006857.
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    June 2019
  24. BAI H, Li Y, Michael NL, Robb ML, et al
    The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes.
    PLoS Comput Biol. 2019;15:e1007056.
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    May 2019
  25. SHARMA A, Menon SN, Sasidevan V, Sinha S, et al
    Epidemic prevalence information on social networks can mediate emergent collective outcomes in voluntary vaccine schemes.
    PLoS Comput Biol. 2019;15:e1006977.
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    April 2019
  26. LASKE T, Bachmann M, Dostert M, Karlas A, et al
    Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth.
    PLoS Comput Biol. 2019;15:e1006944.
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  27. CONTI S, Karplus M
    Estimation of the breadth of CD4bs targeting HIV antibodies by molecular modeling and machine learning.
    PLoS Comput Biol. 2019;15:e1006954.
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    March 2019
  28. PERKINS TA, Reiner RC, Espana G, Ten Bosch QA, et al
    An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections.
    PLoS Comput Biol. 2019;15:e1006710.
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    February 2019
  29. YANG W, Li J, Shaman J
    Characteristics of measles epidemics in China (1951-2004) and implications for elimination: A case study of three key locations.
    PLoS Comput Biol. 2019;15:e1006806.
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    October 2018
  30. HANDEL A, Li Y, McKay B, Pawelek KA, et al
    Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design.
    PLoS Comput Biol. 2018;14:e1006505.
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  31. CAI FY, Fussell T, Cobey S, Lipsitch M, et al
    Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine.
    PLoS Comput Biol. 2018;14:e1006333.
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    July 2018
  32. PROBERT WJM, Jewell CP, Werkman M, Fonnesbeck CJ, et al
    Real-time decision-making during emergency disease outbreaks.
    PLoS Comput Biol. 2018;14:e1006202.
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    May 2018
  33. TAO Y, Shea K, Ferrari M
    Logistical constraints lead to an intermediate optimum in outbreak response vaccination.
    PLoS Comput Biol. 2018;14:e1006161.
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    November 2017
  34. VAN LEEUWEN E, Klepac P, Thorrington D, Pebody R, et al
    fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks.
    PLoS Comput Biol. 2017;13:e1005838.
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    September 2017
  35. HOLME P, Litvak N
    Cost-efficient vaccination protocols for network epidemiology.
    PLoS Comput Biol. 2017;13:e1005696.
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