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Articles published in
J Clin Microbiol
    December 2025
  1. FENG Z, Ge S, Miao P, Liu M, et al
    Diagnostic performance of the Sanity 2.0 assay to detect resistance to rifampicin, isoniazid, and fluoroquinolones in tuberculosis.
    J Clin Microbiol. 2025 Dec 10:e0129925. doi: 10.1128/jcm.01299.
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  2. OLABAMIJI JO, Ochei K, Daniel O, Eneogu R, et al
    Evaluation of stool-based testing to diagnose tuberculosis in children using the Truenat platform in routine settings in Nigeria.
    J Clin Microbiol. 2025 Dec 10:e0104125. doi: 10.1128/jcm.01041.
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    November 2025
  3. FOUCHET T, Nait Chabane M, Allam C, Awad Z, et al
    Clinical evaluation of the diagnostic performances and treatment monitoring of the new PATHFAST TB LAM Ag assay in sputum specimens of patients with tuberculosis or with nontuberculous mycobacteria pulmonary disease.
    J Clin Microbiol. 2025 Nov 26:e0126925. doi: 10.1128/jcm.01269.
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    October 2025
  4. FOLKESSON E, Foroogh F, Kleberg L, Kjellgren V, et al
    A multiplex Mtb-specific FluoroSpot assay measuring IFNgamma, IL-2, and TNF-secreting cells can improve accuracy and differentiation across the tuberculosis spectrum.
    J Clin Microbiol. 2025 Oct 29:e0089425. doi: 10.1128/jcm.00894.
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  5. ARMSTRONG DT, Baird ECE, Pretty L, D'Agostino K, et al
    Diagnostics and new treatment regimens for TB: can the Xpert MTB/XDR assay fill the gap for fluoroquinolone testing?
    J Clin Microbiol. 2025;63:e0064325.
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  6. MIDDLETON S, Singh M, Coad M, Palmer S, et al
    Optimization of a molecularly defined tuberculin formulation: recombinant fusion proteins and epitope surgery.
    J Clin Microbiol. 2025;63:e0055225.
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    September 2025
  7. BRANDAO AP, Ferreira FMdA, Simeao FCdS, Ferrazoli L, et al
    Off-label evaluation of the BD MAX MDR-TB assay for rapid diagnosis of rifampicin and isoniazid resistance of Mycobacterium tuberculosis clinical isolates in a high-volume reference laboratory.
    J Clin Microbiol. 2025 Sep 23:e0091225. doi: 10.1128/jcm.00912.
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  8. CHEN Y, Tang H, Zheng J, Yang Q, et al
    Transforming tuberculosis diagnosis with clinical metagenomics: progress and roadblocks.
    J Clin Microbiol. 2025 Sep 19:e0053725. doi: 10.1128/jcm.00537.
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    August 2025
  9. RISCH P, Broger T, Booi Z, Tiseo K, et al
    AveloMask, a novel breath aerosol collection kit for airborne Mycobacterium tuberculosis: a proof-of-principle assessment.
    J Clin Microbiol. 2025 Aug 21:e0054625. doi: 10.1128/jcm.00546.
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    July 2025
  10. GHEBREKRISTOS Y, Auma E, Mahlobo Z, Venter R, et al
    Waste to worth: diagnostic accuracy of Xpert MTB/XDR on contaminated liquid cultures to salvage the detection of drug-resistant tuberculosis.
    J Clin Microbiol. 2025 Jul 1:e0058025. doi: 10.1128/jcm.00580.
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    June 2025
  11. TU C, Su B, Xiong Y, Xia Z, et al
    Identification and quantification of gyrA variants in fluoroquinolone-resistant Mycobacterium tuberculosis in a MeltArray reaction.
    J Clin Microbiol. 2025 Jun 3:e0014625. doi: 10.1128/jcm.00146.
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    May 2025
  12. SERGE DIAGBOUGA P, Djibougou AD, Pease C, Alcaide A, et al
    Preliminary performance of the VIDAS TB-IGRA as an aid in the diagnosis of individuals infected with Mycobacterium tuberculosis.
    J Clin Microbiol. 2025 May 14:e0164124. doi: 10.1128/jcm.01641.
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    April 2025
  13. TURBAWATY DK, Maulida SN, Anadhea DR, Ritonga MA, et al
    Standard E TB-Feron ELISA and Standard F TB-Feron FIA positivity rates and agreement with QuantiFERON-TB Gold Plus among TB high-risk population in Bandung, Indonesia.
    J Clin Microbiol. 2025;63:e0148624.
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    March 2025
  14. EIGNER U, Koffer J, Betz U, Koglin J, et al
    Evaluation of the cobas MTB and MTB-RIF/INH assay in clinical samples for the detection of Mycobacterium tuberculosis in respiratory specimens.
    J Clin Microbiol. 2025 Mar 25:e0195924. doi: 10.1128/jcm.01959.
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  15. YU S, Liu N, Xie Z, Zeng Y, et al
    Nanopore sequencing for precise detection of Mycobacterium tuberculosis and drug resistance: a retrospective multicenter study in China.
    J Clin Microbiol. 2025 Mar 19:e0181324. doi: 10.1128/jcm.01813.
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  16. CUELLA-MARTIN I, Runyambo D, De Bock S, Diels M, et al
    Direct thin-layer agar for bedaquiline-susceptibility testing of Mycobacterium tuberculosis at BSL2 level yields high accuracy in 15 days from sputum processing.
    J Clin Microbiol. 2025 Mar 3:e0180624. doi: 10.1128/jcm.01806.
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    February 2025
  17. SCHWAB TC, Joseph L, Moono A, Goller PC, et al
    Field evaluation of nanopore targeted next-generation sequencing to predict drug-resistant tuberculosis from native sputum in South Africa and Zambia.
    J Clin Microbiol. 2025 Feb 12:e0139024. doi: 10.1128/jcm.01390.
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    January 2025
  18. RICKMAN HM, Phiri MD, Mbale H, Horton KC, et al
    Low concordance between QIAreach QuantiFERON-TB, a novel interferon-gamma release assay, and QuantiFERON-TB Gold Plus, in a population-based survey in Blantyre, Malawi.
    J Clin Microbiol. 2025;63:e0132324.
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    December 2024
  19. OLSON AM, Wood RC, Weigel KM, Yan AJ, et al
    High-sensitivity detection of Mycobacterium tuberculosis DNA in tongue swab samples.
    J Clin Microbiol. 2024 Dec 31:e0114024. doi: 10.1128/jcm.01140.
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    November 2024
  20. CHAN H-H, Wang Y-C, Jou R
    A simplified pyrazinamidase test for Mycobacterium tuberculosis pyrazinamide antimicrobial susceptibility testing.
    J Clin Microbiol. 2024 Nov 18:e0122724. doi: 10.1128/jcm.01227.
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    October 2024
  21. GAEDDERT M, Glaser K, Chendi BH, Sultanli A, et al
    Host blood protein biomarkers to screen for tuberculosis disease: a systematic review and meta-analysis.
    J Clin Microbiol. 2024 Oct 24:e0078624. doi: 10.1128/jcm.00786.
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    September 2024
  22. LUUKINEN B, Aittoniemi J, Miikkulainen-Lahti T, Mentula S, et al
    Evaluation of the STANDARD M10 MDR-TB and MTB/NTM assays for the detection of Mycobacterium tuberculosis, rifampicin and isoniazid resistance, and nontuberculous mycobacteria in a low-incidence setting.
    J Clin Microbiol. 2024 Sep 19:e0040224. doi: 10.1128/jcm.00402.
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  23. CABIBBE AM, Moghaddasi K, Batignani V, Morgan GSK, et al
    Nanopore-based targeted sequencing test for direct tuberculosis identification, genotyping, and detection of drug resistance mutations: a side-by-side comparison of targeted next-generation sequencing technologies.
    J Clin Microbiol. 2024 Sep 6:e0081524. doi: 10.1128/jcm.00815.
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    August 2024
  24. BUENESTADO-SERRANO S, Martinez-Lirola M, Dippenaar A, Sanz-Perez A, et al
    Bridging the gap between molecular and genomic epidemiology in tuberculosis: inferring MIRU-VNTR patterns from genomic data.
    J Clin Microbiol. 2024 Aug 13:e0074124. doi: 10.1128/jcm.00741.
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    July 2024
  25. OMAR SV, Louw G, Ismail F, Liu X, et al
    Performance evaluation of the Xpert MTB/XDR test for the detection of drug resistance to Mycobacterium tuberculosis among people diagnosed with tuberculosis in South Africa.
    J Clin Microbiol. 2024 Jul 26:e0022924. doi: 10.1128/jcm.00229.
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  26. AKINAGA A, Takahashi M, Yamazaki T, Chikamatsu K, et al
    Development and preliminary evaluation toward a new tuberculosis treatment monitoring tool: the PATHFAST TB LAM Ag assay.
    J Clin Microbiol. 2024 Jul 19:e0062924. doi: 10.1128/jcm.00629.
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    March 2024
  27. WOOD RC, Luabeya AK, Dragovich RB, Olson AM, et al
    Diagnostic accuracy of tongue swab testing on two automated tuberculosis diagnostic platforms, Cepheid Xpert MTB/RIF Ultra and Molbio Truenat MTB Ultima.
    J Clin Microbiol. 2024 Mar 14:e0001924. doi: 10.1128/jcm.00019.
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  28. LUUKINEN B, Antikainen J, Aittoniemi J, Miikkulainen-Lahti T, et al
    Evaluation of the FluoroType Mycobacteria assay for identification of mycobacteria.
    J Clin Microbiol. 2024;62:e0105423.
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  29. DESRUISSEAUX C, Broderick C, Lavergne V, Sy K, et al
    Retrospective validation of MetaSystems' deep-learning-based digital microscopy platform with assistance compared to manual fluorescence microscopy for detection of mycobacteria.
    J Clin Microbiol. 2024;62:e0106923.
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  30. TRAM TTB, Trieu LPT, Nhat LTH, Thu DDA, et al
    Targeted sequencing from cerebrospinal fluid for rapid identification of drug-resistant tuberculous meningitis.
    J Clin Microbiol. 2024 Mar 11:e0128723. doi: 10.1128/jcm.01287.
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    January 2024
  31. DRAIN PK, Dalmat RR
    The elusive allure of a rapid host blood signature for tuberculosis disease.
    J Clin Microbiol. 2024 Jan 25:e0128923. doi: 10.1128/jcm.01289.
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    December 2023
  32. XIA Z, Su B, Tu C, Sun S, et al
    Single-tube protocol for culture-independent spoligotyping of Mycobacterium tuberculosis based on MeltArray.
    J Clin Microbiol. 2023 Dec 19:e0118323. doi: 10.1128/jcm.01183.
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  33. PENG L, Fang T, Cai Q, Li H, et al
    Rapid detection of Mycobacterium tuberculosis in sputum using CRISPR-Cas12b combined with cross-priming amplification in a single reaction.
    J Clin Microbiol. 2023 Dec 19:e0092323. doi: 10.1128/jcm.00923.
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    October 2023
  34. LI M, Qiu Y, Guo M, Qu R, et al
    Evaluation of the Cepheid 3-gene host response blood test for tuberculosis diagnosis and treatment response monitoring in a primary-level clinic in rural China.
    J Clin Microbiol. 2023 Oct 30:e0091123. doi: 10.1128/jcm.00911.
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  35. ISLAM MR, Sharma MK, KhunKhun R, Shandro C, et al
    Whole genome sequencing-based identification of human tuberculosis caused by animal-lineage Mycobacterium orygis.
    J Clin Microbiol. 2023 Oct 25:e0026023. doi: 10.1128/jcm.00260.
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  36. KOEPPEL L, Denkinger CM, Wyss R, Broger T, et al
    Diagnostic performance of host protein signatures as a triage test for active pulmonary TB.
    J Clin Microbiol. 2023;61:e0026423.
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  37. LU J, Murugesan K, Senchyna F, Budvytiene I, et al
    Accuracy of QuantiFERON in active tuberculosis suspects with comorbidities and nontuberculous mycobacterial infection in Northern California.
    J Clin Microbiol. 2023 Oct 16:e0077523. doi: 10.1128/jcm.00775.
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    September 2023
  38. ZHANG X, Lam C, Martinez E, Sim E, et al
    Genomic markers of drug resistance in Mycobacterium tuberculosis populations with minority variants.
    J Clin Microbiol. 2023 Sep 26:e0048523. doi: 10.1128/jcm.00485.
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  39. MANN BC, Jacobson KR, Ghebrekristos Y, Warren RM, et al
    Assessment and validation of enrichment and target capture approaches to improve Mycobacterium tuberculosis WGS from direct patient samples.
    J Clin Microbiol. 2023 Sep 20:e0038223. doi: 10.1128/jcm.00382.
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    June 2023
  40. PILLAY S, de Vos M, Sohn H, Ghebrekristos Y, et al
    To Test or Not? Xpert MTB/RIF as an Alternative to Smear Microscopy to Guide Line Probe Assay Testing for Drug-Resistant Tuberculosis.
    J Clin Microbiol. 2023 Jun 27:e0001723. doi: 10.1128/jcm.00017.
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  41. BURON V, Banaei N
    Inflated Gamma Interferon Response with QuantiFERON-TB Gold Plus Using the Automated Liaison XL Analyzer: a Testing Algorithm To Mitigate False-Positive Results in Low-Incidence Settings.
    J Clin Microbiol. 2023;61:e0029523.
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    May 2023
  42. CHEN X, Li R, Ge S, Li Y, et al
    Rapid Detection of Extensive Drug Resistance by Xpert MTB/XDR Optimizes Therapeutic Decision-Making in Rifampin-Resistant Tuberculosis Patients.
    J Clin Microbiol. 2023 May 30:e0183222. doi: 10.1128/jcm.01832.
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  43. ZHANG S, Chen X, Lin Z, Tan Y, et al
    Quantification of Isoniazid-Heteroresistant Mycobacterium tuberculosis Using Droplet Digital PCR.
    J Clin Microbiol. 2023 May 17:e0188422. doi: 10.1128/jcm.01884.
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    April 2023
  44. LOPEZ JM, Zimic M, Vallejos K, Sevilla D, et al
    Quantitative (1)H Nuclear Magnetic Resonance Assay for the Rapid Detection of Pyrazinamide Resistance in Mycobacterium tuberculosis from Sputum Samples.
    J Clin Microbiol. 2023 Apr 18:e0152222. doi: 10.1128/jcm.01522.
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  45. TRAM TTB, Ha VTN, Trieu LPT, Ashton PM, et al
    FLASH-TB: an Application of Next-Generation CRISPR to Detect Drug Resistant Tuberculosis from Direct Sputum.
    J Clin Microbiol. 2023 Apr 3:e0163422. doi: 10.1128/jcm.01634.
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    March 2023
  46. SYED RR, Catanzaro DG, Colman RE, Cooney CG, et al
    Clinical Evaluation of the XDR-LFC Assay for the Molecular Detection of Isoniazid, Rifampin, Fluoroquinolone, Kanamycin, Capreomycin, and Amikacin Drug Resistance in a Prospective Cohort.
    J Clin Microbiol. 2023;61:e0147822.
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  47. LU P, Wu K, Zhou H, Yu H, et al
    Evaluation of ESAT6-CFP10 Skin Test for Mycobacterium tuberculosis Infection among Persons Living with HIV in China.
    J Clin Microbiol. 2023 Mar 22:e0181622. doi: 10.1128/jcm.01816.
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