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Articles published in
PLoS Comput Biol
    April 2023
  1. WANG Z, Natekar P, Tea C, Tamir S, et al
    MitoTNT: Mitochondrial Temporal Network Tracking for 4D live-cell fluorescence microscopy data.
    PLoS Comput Biol. 2023;19:e1011060.
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    September 2022
  2. NEWAR K, Abdulla AZ, Salari H, Fanchon E, et al
    Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells.
    PLoS Comput Biol. 2022;18:e1010450.
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  3. NOURISA J, Zeller-Plumhoff B, Willumeit-Romer R
    The osteogenetic activities of mesenchymal stem cells in response to Mg2+ ions and inflammatory cytokines: a numerical approach using fuzzy logic controllers.
    PLoS Comput Biol. 2022;18:e1010482.
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    July 2022
  4. ANGELINI E, Wang Y, Zhou JX, Qian H, et al
    A model for the intrinsic limit of cancer therapy: Duality of treatment-induced cell death and treatment-induced stemness.
    PLoS Comput Biol. 2022;18:e1010319.
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    June 2022
  5. MAHADEVAN AS, Long BL, Hu CW, Ryan DT, et al
    cytoNet: Spatiotemporal network analysis of cell communities.
    PLoS Comput Biol. 2022;18:e1009846.
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    May 2022
  6. UHL P, Lowengrub J, Komarova N, Wodarz D, et al
    Spatial dynamics of feedback and feedforward regulation in cell lineages.
    PLoS Comput Biol. 2022;18:e1010039.
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    April 2022
  7. FASSINA D, Costa CM, Longobardi S, Karabelas E, et al
    Modelling the interaction between stem cells derived cardiomyocytes patches and host myocardium to aid non-arrhythmic engineered heart tissue design.
    PLoS Comput Biol. 2022;18:e1010030.
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    January 2022
  8. DONOVAN-MAIYE RM, Brown JM, Chan CK, Ding L, et al
    A deep generative model of 3D single-cell organization.
    PLoS Comput Biol. 2022;18:e1009155.
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  9. HANDZLIK JE, Manu
    Data-driven modeling predicts gene regulatory network dynamics during the differentiation of multipotential hematopoietic progenitors.
    PLoS Comput Biol. 2022;18:e1009779.
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    November 2021
  10. JIANG Z, Generoso SF, Badia M, Payer B, et al
    A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences.
    PLoS Comput Biol. 2021;17:e1009582.
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    October 2021
  11. LEE J, Kim JS, Kim Y
    Atorvastatin-mediated rescue of cancer-related cognitive changes in combined anticancer therapies.
    PLoS Comput Biol. 2021;17:e1009457.
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  12. ZHAO B, Zhang K, Chen CS, Lejeune E, et al
    Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes.
    PLoS Comput Biol. 2021;17:e1009443.
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    September 2021
  13. KANNAN S, Farid M, Lin BL, Miyamoto M, et al
    Transcriptomic entropy benchmarks stem cell-derived cardiomyocyte maturation against endogenous tissue at single cell level.
    PLoS Comput Biol. 2021;17:e1009305.
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  14. GONZALEZ-RAMIREZ M, Ballare C, Mugianesi F, Beringer M, et al
    Differential contribution to gene expression prediction of histone modifications at enhancers or promoters.
    PLoS Comput Biol. 2021;17:e1009368.
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    August 2021
  15. JAEGER KH, Edwards AG, Giles WR, Tveito A, et al
    A computational method for identifying an optimal combination of existing drugs to repair the action potentials of SQT1 ventricular myocytes.
    PLoS Comput Biol. 2021;17:e1009233.
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    July 2021
  16. ZHU K, Cai L, Cui C, de Los Toyos JR, et al
    Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts.
    PLoS Comput Biol. 2021;17:e1009228.
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  17. COY R, Berg M, Phillips JB, Shipley RJ, et al
    Modelling-informed cell-seeded nerve repair construct designs for treating peripheral nerve injuries.
    PLoS Comput Biol. 2021;17:e1009142.
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