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Articles published in
PLoS Comput Biol
    June 2022
  1. MAHADEVAN AS, Long BL, Hu CW, Ryan DT, et al
    cytoNet: Spatiotemporal network analysis of cell communities.
    PLoS Comput Biol. 2022;18:e1009846.
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    May 2022
  2. UHL P, Lowengrub J, Komarova N, Wodarz D, et al
    Spatial dynamics of feedback and feedforward regulation in cell lineages.
    PLoS Comput Biol. 2022;18:e1010039.
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    April 2022
  3. FASSINA D, Costa CM, Longobardi S, Karabelas E, et al
    Modelling the interaction between stem cells derived cardiomyocytes patches and host myocardium to aid non-arrhythmic engineered heart tissue design.
    PLoS Comput Biol. 2022;18:e1010030.
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    January 2022
  4. DONOVAN-MAIYE RM, Brown JM, Chan CK, Ding L, et al
    A deep generative model of 3D single-cell organization.
    PLoS Comput Biol. 2022;18:e1009155.
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  5. HANDZLIK JE, Manu
    Data-driven modeling predicts gene regulatory network dynamics during the differentiation of multipotential hematopoietic progenitors.
    PLoS Comput Biol. 2022;18:e1009779.
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    November 2021
  6. JIANG Z, Generoso SF, Badia M, Payer B, et al
    A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences.
    PLoS Comput Biol. 2021;17:e1009582.
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    October 2021
  7. LEE J, Kim JS, Kim Y
    Atorvastatin-mediated rescue of cancer-related cognitive changes in combined anticancer therapies.
    PLoS Comput Biol. 2021;17:e1009457.
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  8. ZHAO B, Zhang K, Chen CS, Lejeune E, et al
    Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes.
    PLoS Comput Biol. 2021;17:e1009443.
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    September 2021
  9. KANNAN S, Farid M, Lin BL, Miyamoto M, et al
    Transcriptomic entropy benchmarks stem cell-derived cardiomyocyte maturation against endogenous tissue at single cell level.
    PLoS Comput Biol. 2021;17:e1009305.
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  10. GONZALEZ-RAMIREZ M, Ballare C, Mugianesi F, Beringer M, et al
    Differential contribution to gene expression prediction of histone modifications at enhancers or promoters.
    PLoS Comput Biol. 2021;17:e1009368.
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    August 2021
  11. JAEGER KH, Edwards AG, Giles WR, Tveito A, et al
    A computational method for identifying an optimal combination of existing drugs to repair the action potentials of SQT1 ventricular myocytes.
    PLoS Comput Biol. 2021;17:e1009233.
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    July 2021
  12. ZHU K, Cai L, Cui C, de Los Toyos JR, et al
    Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts.
    PLoS Comput Biol. 2021;17:e1009228.
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  13. COY R, Berg M, Phillips JB, Shipley RJ, et al
    Modelling-informed cell-seeded nerve repair construct designs for treating peripheral nerve injuries.
    PLoS Comput Biol. 2021;17:e1009142.
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    March 2021
  14. BROWN J, Barry C, Schmitz MT, Argus C, et al
    Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells.
    PLoS Comput Biol. 2021;17:e1008778.
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    February 2021
  15. JAEGER KH, Wall S, Tveito A
    Computational prediction of drug response in short QT syndrome type 1 based on measurements of compound effect in stem cell-derived cardiomyocytes.
    PLoS Comput Biol. 2021;17:e1008089.
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    January 2021
  16. MARTINEZ-GARCIA PM, Garcia-Torres M, Divina F, Terron-Bautista J, et al
    Genome-wide prediction of topoisomerase IIbeta binding by architectural factors and chromatin accessibility.
    PLoS Comput Biol. 2021;17:e1007814.
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  17. LOUIE W, Shen MW, Tahiry Z, Zhang S, et al
    Machine learning based CRISPR gRNA design for therapeutic exon skipping.
    PLoS Comput Biol. 2021;17:e1008605.
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  18. GIAMMONA J, Campas O
    Physical constraints on early blastomere packings.
    PLoS Comput Biol. 2021;17:e1007994.
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    December 2020
  19. CARCAMO-ORIVE I, Henrion MYR, Zhu K, Beckmann ND, et al
    Predictive network modeling in human induced pluripotent stem cells identifies key driver genes for insulin responsiveness.
    PLoS Comput Biol. 2020;16:e1008491.
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    October 2020
  20. LIU YYF, Lu Y, Oh S, Conduit GJ, et al
    Machine learning to predict mesenchymal stem cell efficacy for cartilage repair.
    PLoS Comput Biol. 2020;16:e1008275.
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    September 2020
  21. TRAN TN, Bader GD
    Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data.
    PLoS Comput Biol. 2020;16:e1008205.
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  22. RAPHEL F, De Korte T, Lombardi D, Braam S, et al
    A greedy classifier optimization strategy to assess ion channel blocking activity and pro-arrhythmia in hiPSC-cardiomyocytes.
    PLoS Comput Biol. 2020;16:e1008203.
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