April 2025
1. NOURBAKHSH M, Zheng Y, Noor H, Chen H, et al
   Revealing cancer driver genes through integrative transcriptomic and epigenomic analyses with Moonlight.
   PLoS Comput Biol. 2025;21:e1012999.
   

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2. STAPLEY JN, Hamley JID, Basanez MG, Walker M, et al
   Modelling transmission thresholds and hypoendemic stability for onchocerciasis elimination.
   PLoS Comput Biol. 2025;21:e1013026.
   

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   February 2025
3. SAKAI SA, Nomura R, Nagasawa S, Chi S, et al
   SpatialKNifeY (SKNY): Extending from spatial domain to surrounding area to identify microenvironment features with single-cell spatial omics data.
   PLoS Comput Biol. 2025;21:e1012854.
   

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4. ZHAN X, Xu Q, Zheng Y, Lu G, et al
   Reliability-enhanced data cleaning in biomedical machine learning using inductive conformal prediction.
   PLoS Comput Biol. 2025;21:e1012803.
   

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   January 2025
5. SHI X, Wang X, Jin L, Halakivi-Clarke L, et al
   Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq data.
   PLoS Comput Biol. 2025;21:e1012750.
   

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   November 2024
6. HUANG HY, Zhang FW, Yu J, Xiao YH, et al
   A computational analysis of the oncogenic and anti-tumor immunity role of P4HA3 in human cancers.
   PLoS Comput Biol. 2024;20:e1012284.
   

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   October 2024
7. CHEN L, Huang ZH, Sun Y, Domaratzki M, et al
   Conditional probabilistic diffusion model driven synthetic radiogenomic applications in breast cancer.
   PLoS Comput Biol. 2024;20:e1012490.
   

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   September 2024
8. SYLLA A, Chevillon C, Djidjiou-Demasse R, Seydi O, et al
   Understanding the transmission of bacterial agents of sapronotic diseases using an ecosystem-based approach: A first spatially realistic metacommunity model.
   PLoS Comput Biol. 2024;20:e1012435.
   

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   July 2024
9. NEVAREZ AJ, Mudla A, Diaz SA, Hao N, et al
   Using deep learning to decipher the impact of telomerase promoter mutations on the dynamic metastatic morpholome.
   PLoS Comput Biol. 2024;20:e1012271.
   

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   June 2024
10. XIE X, Sinha S
    Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptomic data.
    PLoS Comput Biol. 2024;20:e1012103.
    

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11. VANDERDOES J, Marceaux C, Yokote K, Asselin-Labat ML, et al
    Using random forests to uncover the predictive power of distance-varying cell interactions in tumor microenvironments.
    PLoS Comput Biol. 2024;20:e1011361.
    

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12. DIMITRIOU NM, Flores-Torres S, Kyriakidou M, Kinsella JM, et al
    Cancer cell sedimentation in 3D cultures reveals active migration regulated by self-generated gradients and adhesion sites.
    PLoS Comput Biol. 2024;20:e1012112.
    

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13. PERRONE MC, Lerner MG, Dunworth M, Ewald AJ, et al
    Prioritizing drug targets by perturbing biological network response functions.
    PLoS Comput Biol. 2024;20:e1012195.
    

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    May 2024
14. BENZEKRY S, Mastri M, Nicolo C, Ebos JML, et al
    Machine-learning and mechanistic modeling of metastatic breast cancer after neoadjuvant treatment.
    PLoS Comput Biol. 2024;20:e1012088.
    

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    April 2024
15. LIU C, Xiao K, Yu C, Lei Y, et al
    A probabilistic knowledge graph for target identification.
    PLoS Comput Biol. 2024;20:e1011945.
    

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    March 2024
16. VALEGA-MACKENZIE W, Rodriguez Messan M, Yogurtcu ON, Nukala U, et al
    Dose optimization of an adjuvanted peptide-based personalized neoantigen melanoma vaccine.
    PLoS Comput Biol. 2024;20:e1011247.
    

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