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Articles published in
PLoS Comput Biol
    February 2024
  1. DATTA M, Kennedy M, Siri S, Via LE, et al
    Mathematical model of oxygen, nutrient, and drug transport in Tuberculosis Granulomas.
    PLoS Comput Biol. 2024;20:e1011847.
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    January 2024
  2. PANDEY A, Feuka AB, Cosgrove M, Moriarty M, et al
    Wildlife vaccination strategies for eliminating bovine tuberculosis in white-tailed deer populations.
    PLoS Comput Biol. 2024;20:e1011287.
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  3. LO IACONO G, Cook AJC, Derks G, Fleming LE, et al
    A mathematical, classical stratification modeling approach to disentangling the impact of weather on infectious diseases: A case study using spatio-temporally disaggregated Campylobacter surveillance data for England and Wales.
    PLoS Comput Biol. 2024;20:e1011714.
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    December 2023
  4. MULBERRY N, Rutherford AR, Colijn C
    Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling.
    PLoS Comput Biol. 2023;19:e1011755.
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  5. CARRUTHERS J, Finnie T
    Using mixture density networks to emulate a stochastic within-host model of Francisella tularensis infection.
    PLoS Comput Biol. 2023;19:e1011266.
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    November 2023
  6. HEUPINK TH, Verboven L, Sharma A, Rennie V, et al
    The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples.
    PLoS Comput Biol. 2023;19:e1011648.
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  7. COLGATE ER, Klopfer C, Dickson DM, Lee B, et al
    Network analysis of patterns and relevance of enteric pathogen co-infections among infants in a diarrhea-endemic setting.
    PLoS Comput Biol. 2023;19:e1011624.
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  8. HALLSTROM E, Kandavalli V, Ranefall P, Elf J, et al
    Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy.
    PLoS Comput Biol. 2023;19:e1011181.
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  9. WESSEL RE, Dolatshahi S
    Quantitative mechanistic model reveals key determinants of placental IgG transfer and informs prenatal immunization strategies.
    PLoS Comput Biol. 2023;19:e1011109.
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    October 2023
  10. OJALA F, Sater MRA, Miller LG, McKinnell JA, et al
    Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization.
    PLoS Comput Biol. 2023;19:e1010898.
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  11. CASCANTE-VEGA J, Galanti M, Schley K, Pei S, et al
    Inference of transmission dynamics and retrospective forecast of invasive meningococcal disease.
    PLoS Comput Biol. 2023;19:e1011564.
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    September 2023
  12. GRANA-MIRAGLIA L, Morales-Lizcano N, Wang PW, Hwang DM, et al
    Predictive modeling of antibiotic eradication therapy success for new-onset Pseudomonas aeruginosa pulmonary infections in children with cystic fibrosis.
    PLoS Comput Biol. 2023;19:e1011424.
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    August 2023
  13. LEE CY, Diegel J, France MT, Ravel J, et al
    Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy.
    PLoS Comput Biol. 2023;19:e1011295.
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    July 2023
  14. VARGAS R, Abbott L, Bower D, Frahm N, et al
    Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment.
    PLoS Comput Biol. 2023;19:e1010770.
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    June 2023
  15. BUDAK M, Cicchese JM, Maiello P, Borish HJ, et al
    Optimizing tuberculosis treatment efficacy: Comparing the standard regimen with Moxifloxacin-containing regimens.
    PLoS Comput Biol. 2023;19:e1010823.
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    April 2023
  16. MARTINECZ A, Boeree MJ, Diacon AH, Dawson R, et al
    High rifampicin peak plasma concentrations accelerate the slow phase of bacterial decline in tuberculosis patients: Evidence for heteroresistance.
    PLoS Comput Biol. 2023;19:e1011000.
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    December 2022
  17. GOLDSTEIN IH, Bayer D, Barilar I, Kizito B, et al
    Using genetic data to identify transmission risk factors: Statistical assessment and application to tuberculosis transmission.
    PLoS Comput Biol. 2022;18:e1010696.
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    November 2022
  18. CAVALLARO M, Coelho J, Ready D, Decraene V, et al
    Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease.
    PLoS Comput Biol. 2022;18:e1010726.
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  19. CHAO E, Chato C, Vender R, Olabode AS, et al
    Molecular source attribution.
    PLoS Comput Biol. 2022;18:e1010649.
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    July 2022
  20. MIETCHEN MS, Short CT, Samore M, Lofgren ET, et al
    Examining the impact of ICU population interaction structure on modeled colonization dynamics of Staphylococcus aureus.
    PLoS Comput Biol. 2022;18:e1010352.
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    April 2022
  21. WEERASURIYA CK, Harris RC, McQuaid CF, Gomez GB, et al
    Updating age-specific contact structures to match evolving demography in a dynamic mathematical model of tuberculosis vaccination.
    PLoS Comput Biol. 2022;18:e1010002.
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  22. SAEIDPOUR A, Bansal S, Rohani P
    Dissecting recurrent waves of pertussis across the boroughs of London.
    PLoS Comput Biol. 2022;18:e1009898.
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    March 2022
  23. GODIJK NG, Bootsma MCJ, van Werkhoven HC, Schweitzer VA, et al
    Does plasmid-based beta-lactam resistance increase E. coli infections: Modelling addition and replacement mechanisms.
    PLoS Comput Biol. 2022;18:e1009875.
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    February 2022
  24. WANG S, Reeve SM, Holt GT, Ojewole AA, et al
    Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.
    PLoS Comput Biol. 2022;18:e1009855.
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  25. YAESOUBI R, Cohen T, Hsu K, Gift TL, et al
    Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibiotics.
    PLoS Comput Biol. 2022;18:e1009842.
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  26. LOCHEN A, Truscott JE, Croucher NJ
    Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates.
    PLoS Comput Biol. 2022;18:e1009389.
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    December 2021
  27. EWALD J, Rivieccio F, Radosa L, Schuster S, et al
    Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis.
    PLoS Comput Biol. 2021;17:e1009645.
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  28. SAH P, Otterstatter M, Leu ST, Leviyang S, et al
    Revealing mechanisms of infectious disease spread through empirical contact networks.
    PLoS Comput Biol. 2021;17:e1009604.
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    November 2021
  29. DUAN Q, Carmody C, Donovan B, Guy RJ, et al
    Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia.
    PLoS Comput Biol. 2021;17:e1009385.
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    October 2021
  30. BALAKRISHNA S, Salazar-Vizcaya L, Schmidt AJ, Kachalov V, et al
    Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study.
    PLoS Comput Biol. 2021;17:e1009529.
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    September 2021
  31. GOSCE L, Abou Jaoude GJ, Kedziora DJ, Benedikt C, et al
    Optima TB: A tool to help optimally allocate tuberculosis spending.
    PLoS Comput Biol. 2021;17:e1009255.
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    July 2021
  32. NOROY C, Meyer DF
    The super repertoire of type IV effectors in the pangenome of Ehrlichia spp. provides insights into host-specificity and pathogenesis.
    PLoS Comput Biol. 2021;17:e1008788.
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    June 2021
  33. O'HARE A, Balaz D, Wright DM, McCormick C, et al
    A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir.
    PLoS Comput Biol. 2021;17:e1009005.
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  34. SANDHU SK, Bayliss CD, Morozov AY
    How does feedback from phage infections influence the evolution of phase variation in Campylobacter?
    PLoS Comput Biol. 2021;17:e1009067.
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