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Articles published in
Proc Natl Acad Sci U S A
    December 2025
  1. NELSON JAD, Garfinkle SE, Lin ZJ, Park J, et al
    Machine learning enables de novo multiepitope design of Plasmodium falciparum circumsporozoite protein to target trimeric L9 antibody.
    Proc Natl Acad Sci U S A. 2025;122:e2512358122.
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    November 2025
  2. BANDINI M, Ghone D, Evans EL 3rd, Suzuki A, et al
    HIV-1 Vif and Vpr cooperatively modulate the cell cycle to maximize per-cell virion production.
    Proc Natl Acad Sci U S A. 2025;122:e2511502122.
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  3. HU L, Zhang A, Warshel A
    Exploring evolutionary trajectories of drug resistance.
    Proc Natl Acad Sci U S A. 2025;122:e2517715122.
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  4. MULLER L, Mallick P, Marin-Carballo AB, Donges P, et al
    Testing paradox may explain increased observed prevalence of bacterial STIs among MSM on HIV PrEP: A modeling study.
    Proc Natl Acad Sci U S A. 2025;122:e2524944122.
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    October 2025
  5. VADON C, Nguyen XN, Siahaan V, Song Y, et al
    Microtubule remodeling by the innate immune factor Trim69 compromises dynein-dependent migration of HIV virion cores toward the nucleus.
    Proc Natl Acad Sci U S A. 2025;122:e2505128122.
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  6. KIM S, Travisano KA, Wilder B, Palomares M, et al
    Exceptionally broad HIV-1 neutralization via bispecific antibody-mediated prepositioning.
    Proc Natl Acad Sci U S A. 2025;122:e2517311122.
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    September 2025
  7. ALENCAR GF, Mohamed AO, Burnett MG, Jean SS, et al
    Triple checkpoint blockade of PD-1, Tim-3, and Lag-3 enhances adoptive T cell immunotherapy in a mouse model of ovarian cancer.
    Proc Natl Acad Sci U S A. 2025;122:e2419888122.
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  8. LIU Y, Li P, Zheng YM, Hikichi Y, et al
    IFN-inducible human phospholipid scramblase 1 (PLSCR1) protein restricts HIV-1 infection by inhibiting membrane fusion.
    Proc Natl Acad Sci U S A. 2025;122:e2516527122.
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  9. WAN Z, Li C, Zhou Y, Yu Y, et al
    Organoid-based neutralization assays reveal a distinctive profile of SARS-CoV-2 antibodies and recapitulate the real-world efficacy.
    Proc Natl Acad Sci U S A. 2025;122:e2509616122.
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    August 2025
  10. GU F, Naghavi MH
    Negative interplay between HIV-1 Gag and amyloid precursor protein centers around competition for VPS4A and TSG101.
    Proc Natl Acad Sci U S A. 2025;122:e2503988122.
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  11. PAMPENA MB, Samer S, Viox EG, Nguyen K, et al
    Therapeutic CD8(+) T cell tissue retention and immunomodulation during ART interruption fail to prevent SIV rebound.
    Proc Natl Acad Sci U S A. 2025;122:e2501037122.
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  12. LIN X, Cottrell CA, Kalyuzhniy O, Tingle R, et al
    Structural insights into VRC01-class bnAb precursors with diverse light chains elicited in the IAVI G001 human vaccine trial.
    Proc Natl Acad Sci U S A. 2025;122:e2510163122.
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    June 2025
  13. MURAKAMI T, Cardoso RS, Manivannan P, Chang YT, et al
    Macropinosomes are a site of HIV-1 entry into primary CD4(+) T cells.
    Proc Natl Acad Sci U S A. 2025;122:e2417676122.
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    May 2025
  14. LUK TY, Yim LY, Zhou R, Mo Y, et al
    BRD9 functions as an HIV-1 latency regulatory factor.
    Proc Natl Acad Sci U S A. 2025;122:e2418467122.
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  15. KOH Y, Vazquez-Rosa E, Gao F, Li H, et al
    Inhibiting 15-PGDH blocks blood-brain barrier deterioration and protects mice from Alzheimer's disease and traumatic brain injury.
    Proc Natl Acad Sci U S A. 2025;122:e2417224122.
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  16. DARTOIS V, Lan T, Ganapathy US, Wong CF, et al
    Next-generation rifamycins for the treatment of mycobacterial infections.
    Proc Natl Acad Sci U S A. 2025;122:e2423842122.
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    April 2025
  17. NCHIOUA R, Kmiec D, Krchlikova V, Mattes S, et al
    Host ZAP activity correlates with the levels of CpG suppression in primate lentiviruses.
    Proc Natl Acad Sci U S A. 2025;122:e2419489122.
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  18. LI C, Burdick RC, Siddiqui R, Janaka SK, et al
    Lenacapavir disrupts HIV-1 core integrity while stabilizing the capsid lattice.
    Proc Natl Acad Sci U S A. 2025;122:e2420497122.
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    March 2025
  19. JAHAN C, Bonnet-Madin L, Machida S, Sobhian B, et al
    Unintegrated HIV-1 DNA recruits cGAS via its histone-binding domain to escape innate immunity.
    Proc Natl Acad Sci U S A. 2025;122:e2424465122.
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  20. SANG X, Jiao H, Meng Q, Fang X, et al
    Structural mechanisms underlying the modulation of CXCR4 by diverse small-molecule antagonists.
    Proc Natl Acad Sci U S A. 2025;122:e2425795122.
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    February 2025
  21. GAO Y, Barton JP
    A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses.
    Proc Natl Acad Sci U S A. 2025;122:e2405379122.
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  22. MORBIOLI GG, Baillargeon KR, Kalimashe MN, Kana V, et al
    Clinical evaluation of patterned dried plasma spot cards to support quantification of HIV viral load and reflexive genotyping.
    Proc Natl Acad Sci U S A. 2025;122:e2419160122.
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  23. KING HAD, Brammer D, Lewitus E, Fennessey CM, et al
    SIV monoclonal antibody administration spanning treatment interruption in macaques delays viral rebound and selects escape variants.
    Proc Natl Acad Sci U S A. 2025;122:e2404767122.
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    January 2025
  24. NYENHUIS DA, Watanabe SM, Tjandra N, Carter CA, et al
    Tsg101 mimicry of canonical E2 enzymes underlies its role in ubiquitin signaling.
    Proc Natl Acad Sci U S A. 2025;122:e2419542121.
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    December 2024
  25. HERRON L, Mondal K, Schneekloth JS Jr, Tiwary P, et al
    Inferring phase transitions and critical exponents from limited observations with thermodynamic maps.
    Proc Natl Acad Sci U S A. 2024;121:e2321971121.
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  26. ZHANG Y, Schmick SD, Xie L, Ghosh U, et al
    Very broad distribution of beta sheet registries of the HIV gp41 fusion peptide supports mutational robustness for fusion and infection.
    Proc Natl Acad Sci U S A. 2024;121:e2402953121.
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  27. MITRA R, Usher ET, Dedeoglu S, Crotteau MJ, et al
    Molecular insights into the interaction between a disordered protein and a folded RNA.
    Proc Natl Acad Sci U S A. 2024;121:e2409139121.
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  28. ABT ER, Lam AK, Noguchi M, Rashid K, et al
    Staggered immunization with mRNA vaccines encoding SARS-CoV-2 polymerase or spike antigens broadens the T cell epitope repertoire.
    Proc Natl Acad Sci U S A. 2024;121:e2406332121.
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    November 2024
  29. SERRANO T, Casartelli N, Ghasemi F, Wioland H, et al
    HIV-1 budding requires cortical actin disassembly by the oxidoreductase MICAL1.
    Proc Natl Acad Sci U S A. 2024;121:e2407835121.
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    October 2024
  30. CARRICO AW, Ryan DT, Berona J, Dominguez BS, et al
    HIV, inflammation, and initiation of methamphetamine use in sexual and gender minorities assigned male at birth.
    Proc Natl Acad Sci U S A. 2024;121:e2407046121.
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  31. ROSENBERG M, Beidelman ET, Chen X, Whiteson Kabudula C, et al
    Effect of a cash transfer intervention on memory decline and dementia probability in older adults in rural South Africa.
    Proc Natl Acad Sci U S A. 2024;121:e2321078121.
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    September 2024
  32. BAKER RP, Liu AZ, Casadevall A
    Cell wall melanin impedes growth of the Cryptococcus neoformans polysaccharide capsule by sequestering calcium.
    Proc Natl Acad Sci U S A. 2024;121:e2412534121.
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  33. HATTORI SI, Bulut H, Hayashi H, Kishimoto N, et al
    Structural and virologic mechanism of the emergence of resistance to M(pro) inhibitors in SARS-CoV-2.
    Proc Natl Acad Sci U S A. 2024;121:e2404175121.
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  34. CAPOFERRI AA, Wiegand A, Hong F, Jacobs JL, et al
    HIV-1 control in vivo is related to the number but not the fraction of infected cells with viral unspliced RNA.
    Proc Natl Acad Sci U S A. 2024;121:e2405210121.
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    August 2024
  35. MEHTA K, Yentsch H, Lee J, Yook Y, et al
    Phosphatidylinositol-3-phosphate mediates Arc capsid secretion through the multivesicular body pathway.
    Proc Natl Acad Sci U S A. 2024;121:e2322422121.
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  36. YASIN S, Lesko SL, Kharytonchyk S, Brown JD, et al
    Role of RNA structural plasticity in modulating HIV-1 genome packaging and translation.
    Proc Natl Acad Sci U S A. 2024;121:e2407400121.
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    July 2024
  37. ORTIZ Y, Anasti K, Pane AK, Cronin K, et al
    The CH1 domain influences the expression and antigen sensing of the HIV-specific CH31 IgM-BCR and IgG-BCR.
    Proc Natl Acad Sci U S A. 2024;121:e2404728121.
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  38. GUNEY MH, Nagalekshmi K, McCauley SM, Carbone C, et al
    IFIH1 (MDA5) is required for innate immune detection of intron-containing RNA expressed from the HIV-1 provirus.
    Proc Natl Acad Sci U S A. 2024;121:e2404349121.
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  39. HU Z, Lopez-Munoz AD, Kosik I, Li T, et al
    Recombinant OC43 SARS-CoV-2 spike replacement virus: An improved BSL-2 proxy virus for SARS-CoV-2 neutralization assays.
    Proc Natl Acad Sci U S A. 2024;121:e2310421121.
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  40. PURCELL H, Kohler IV, Ciancio A, Mwera J, et al
    Mortality risk information and health-seeking behavior during an epidemic.
    Proc Natl Acad Sci U S A. 2024;121:e2315677121.
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    June 2024
  41. SU PA, Chang CH, Yen SB, Wu HY, et al
    Epitranscriptomic cytidine methylation of the hepatitis B viral RNA is essential for viral reverse transcription and particle production.
    Proc Natl Acad Sci U S A. 2024;121:e2400378121.
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    May 2024
  42. WU C, Raheem IT, Nahas DD, Citron M, et al
    Stabilized trimeric peptide immunogens of the complete HIV-1 gp41 N-heptad repeat and their use as HIV-1 vaccine candidates.
    Proc Natl Acad Sci U S A. 2024;121:e2317230121.
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  43. BLANCO A, Coronado RA, Arun N, Ma K, et al
    Monocyte to macrophage differentiation and changes in cellular redox homeostasis promote cell type-specific HIV latency reactivation.
    Proc Natl Acad Sci U S A. 2024;121:e2313823121.
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    April 2024
  44. KIZITO F, Nguyen K, Mbonye U, Shukla M, et al
    Structural rearrangements in the nucleus localize latent HIV proviruses to a perinucleolar compartment supportive of reactivation.
    Proc Natl Acad Sci U S A. 2024;121:e2202003121.
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  45. SACCHI P, Wright SE, Neoptolemou P, Lampronti GI, et al
    Crystal size, shape, and conformational changes drive both the disappearance and reappearance of ritonavir polymorphs in the mill.
    Proc Natl Acad Sci U S A. 2024;121:e2319127121.
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  46. BISWAS A, Choudhuri I, Arnold E, Lyumkis D, et al
    Kinetic coevolutionary models predict the temporal emergence of HIV-1 resistance mutations under drug selection pressure.
    Proc Natl Acad Sci U S A. 2024;121:e2316662121.
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    March 2024
  47. SHICHIJO T, Yasunaga JI, Sato K, Nosaka K, et al
    Vulnerability to APOBEC3G linked to the pathogenicity of deltaretroviruses.
    Proc Natl Acad Sci U S A. 2024;121:e2309925121.
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  48. OBRIEN SJ
    Legacy of a magic gene-CCR5-?32: From discovery to clinical benefit in a generation.
    Proc Natl Acad Sci U S A. 2024;121:e2321907121.
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