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Articles published in
PLoS Genet
    March 2024
  1. WARD CM, Onetto CA, Van Den Heuvel S, Cuijvers KM, et al
    Recombination, admixture and genome instability shape the genomic landscape of Saccharomyces cerevisiae derived from spontaneous grape ferments.
    PLoS Genet. 2024;20:e1011223.
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  2. LUO Z, McTaggart A, Schwessinger B
    Genome biology and evolution of mating-type loci in four cereal rust fungi.
    PLoS Genet. 2024;20:e1011207.
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    February 2024
  3. RIVAS-GONZALEZ I, Schierup MH, Wakeley J, Hobolth A, et al
    TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting.
    PLoS Genet. 2024;20:e1010836.
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  4. RAY DD, Flagel L, Schrider DR
    IntroUNET: Identifying introgressed alleles via semantic segmentation.
    PLoS Genet. 2024;20:e1010657.
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    January 2024
  5. ZHANG QX, Liu T, Guo X, Zhen J, et al
    Searching across-cohort relatives in 54,092 GWAS samples via encrypted genotype regression.
    PLoS Genet. 2024;20:e1011037.
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  6. LEWANSKI AL, Grundler MC, Bradburd GS
    The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics.
    PLoS Genet. 2024;20:e1011110.
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    December 2023
  7. NOVAK LVF, Treitli SC, Pyrih J, Halakuc P, et al
    Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria.
    PLoS Genet. 2023;19:e1011050.
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  8. KAWAI Y, Watanabe Y, Omae Y, Miyahara R, et al
    Exploring the genetic diversity of the Japanese population: Insights from a large-scale whole genome sequencing analysis.
    PLoS Genet. 2023;19:e1010625.
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  9. LEGRAND C, Andriantsoa R, Lichter P, Raddatz G, et al
    Time-resolved, integrated analysis of clonally evolving genomes.
    PLoS Genet. 2023;19:e1011085.
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  10. WANG D, Perera D, He J, Cao C, et al
    cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions.
    PLoS Genet. 2023;19:e1011074.
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  11. MUNASINGHE M, Read A, Stitzer MC, Song B, et al
    Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.
    PLoS Genet. 2023;19:e1011086.
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    November 2023
  12. MO Z, Siepel A
    Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data.
    PLoS Genet. 2023;19:e1011032.
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  13. MAROM R, Zhang B, Washington ME, Song IW, et al
    Dominant negative variants in KIF5B cause osteogenesis imperfecta via down regulation of mTOR signaling.
    PLoS Genet. 2023;19:e1011005.
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  14. AYALA NM, Genetti M, Corbett-Detig R
    Inferring multi-locus selection in admixed populations.
    PLoS Genet. 2023;19:e1011062.
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  15. GOUDET J, Weir BS
    An allele-sharing, moment-based estimator of global, population-specific and population-pair FST under a general model of population structure.
    PLoS Genet. 2023;19:e1010871.
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  16. MICHEL JC, Grivette MMB, Harshfield AT, Huynh L, et al
    Electrical synapse structure requires distinct isoforms of a postsynaptic scaffold.
    PLoS Genet. 2023;19:e1011045.
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    October 2023
  17. MOCCI E, Ward K, Perry JA, Starkweather A, et al
    Genome wide association joint analysis reveals 99 risk loci for pain susceptibility and pleiotropic relationships with psychiatric, metabolic, and immunological traits.
    PLoS Genet. 2023;19:e1010977.
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  18. RADULESCU E, Chen Q, Pergola G, Di Carlo P, et al
    Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia.
    PLoS Genet. 2023;19:e1010989.
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  19. AUBIN E, Llauro C, Garrigue J, Mirouze M, et al
    Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants.
    PLoS Genet. 2023;19:e1010964.
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  20. CAURET CMS, Jordan DC, Kukoly LM, Burton SR, et al
    Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis.
    PLoS Genet. 2023;19:e1010990.
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  21. WULFRIDGE P, Davidovich A, Salvador AC, Manno GC, et al
    Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation.
    PLoS Genet. 2023;19:e1010997.
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    September 2023
  22. WEN X, Feng K, Qin J, Wei P, et al
    A detoxification pathway initiated by a nuclear receptor TcHR96h in Tetranychus cinnabarinus (Boisduval).
    PLoS Genet. 2023;19:e1010911.
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  23. ROCA-UMBERT A, Garcia-Calleja J, Vogel-Gonzalez M, Fierro-Villegas A, et al
    Human genetic adaptation related to cellular zinc homeostasis.
    PLoS Genet. 2023;19:e1010950.
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    August 2023
  24. TETERINA AA, Willis JH, Lukac M, Jovelin R, et al
    Genomic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes.
    PLoS Genet. 2023;19:e1010879.
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    July 2023
  25. WAGNER ER, Nightingale NM, Jen A, Overmyer KA, et al
    PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae.
    PLoS Genet. 2023;19:e1010593.
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    June 2023
  26. NAKANO S, Kashio S, Nishimura K, Takeishi A, et al
    Damage sensing mediated by serine proteases Hayan and Persephone for Toll pathway activation in apoptosis-deficient flies.
    PLoS Genet. 2023;19:e1010761.
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  27. BRISEVAC D, Prakash C, Kaiser TS
    Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock.
    PLoS Genet. 2023;19:e1010763.
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  28. SUN B, Kim H, Mello CC, Priess JR, et al
    The CERV protein of Cer1, a C. elegans LTR retrotransposon, is required for nuclear export of viral genomic RNA and can form giant nuclear rods.
    PLoS Genet. 2023;19:e1010804.
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  29. VEDANAYAGAM J, Lin CJ, Papareddy R, Nodine M, et al
    Regulatory logic of endogenous RNAi in silencing de novo genomic conflicts.
    PLoS Genet. 2023;19:e1010787.
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  30. MIAO Y, Zhao Y, Wan S, Mei Q, et al
    Integrated analysis of genome-wide association studies and 3D epigenomic characteristics reveal the BMP2 gene regulating loin muscle depth in Yorkshire pigs.
    PLoS Genet. 2023;19:e1010820.
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  31. WANG N, Cao S, Liu Z, Xiao H, et al
    Genomic conservation of crop wild relatives: A case study of citrus.
    PLoS Genet. 2023;19:e1010811.
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    May 2023
  32. PISUPATI R, Nizhynska V, Molla Morales A, Nordborg M, et al
    On the causes of gene-body methylation variation in Arabidopsis thaliana.
    PLoS Genet. 2023;19:e1010728.
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  33. JIANG MZ, Aguet F, Ardlie K, Chen J, et al
    Canonical correlation analysis for multi-omics: Application to cross-cohort analysis.
    PLoS Genet. 2023;19:e1010517.
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    April 2023
  34. KOPPES EA, Johnson MA, Moresco JJ, Luppi P, et al
    Insulin secretion deficits in a Prader-Willi syndrome beta-cell model are associated with a concerted downregulation of multiple endoplasmic reticulum chaperones.
    PLoS Genet. 2023;19:e1010710.
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  35. BRUAL T, Effantin G, Baltenneck J, Attaiech L, et al
    A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria.
    PLoS Genet. 2023;19:e1010725.
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    March 2023
  36. SLABODNICK MM, Tintori SC, Prakash M, Zhang P, et al
    Zyxin contributes to coupling between cell junctions and contractile actomyosin networks during apical constriction.
    PLoS Genet. 2023;19:e1010319.
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  37. ONETTO CA, Kutyna DR, Kolouchova R, McCarthy J, et al
    SO2 and copper tolerance exhibit an evolutionary trade-off in Saccharomyces cerevisiae.
    PLoS Genet. 2023;19:e1010692.
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  38. KRISHNAN S, DeMaere MZ, Beck D, Ostrowski M, et al
    Rhometa: Population recombination rate estimation from metagenomic read datasets.
    PLoS Genet. 2023;19:e1010683.
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    February 2023
  39. XU L, Wang X, Lu X, Liang F, et al
    Long-read sequencing identifies novel structural variations in colorectal cancer.
    PLoS Genet. 2023;19:e1010514.
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  40. CHOI SW, Garcia-Gonzalez J, Ruan Y, Wu HM, et al
    PRSet: Pathway-based polygenic risk score analyses and software.
    PLoS Genet. 2023;19:e1010624.
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  41. NIELSEN SV, Vaughn AH, Leppala K, Landis MJ, et al
    Bayesian inference of admixture graphs on Native American and Arctic populations.
    PLoS Genet. 2023;19:e1010410.
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    January 2023
  42. WU MY, Forcina G, Low GW, Sadanandan KR, et al
    Historic samples reveal loss of wild genotype through domestic chicken introgression during the Anthropocene.
    PLoS Genet. 2023;19:e1010551.
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  43. WATTACHERIL JJ, Raj S, Knowles DA, Greally JM, et al
    Using epigenomics to understand cellular responses to environmental influences in diseases.
    PLoS Genet. 2023;19:e1010567.
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  44. MARY-HUARD T, Balding D
    Fast and accurate joint inference of coancestry parameters for populations and/or individuals.
    PLoS Genet. 2023;19:e1010054.
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    December 2022
  45. LUO X, Zhou H, Cao D, Yan F, et al
    Domestication and selection footprints in Persian walnuts (Juglans regia).
    PLoS Genet. 2022;18:e1010513.
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  46. MARIE-ORLEACH L, Brochmann C, Glemin S
    Mating system and speciation I: Accumulation of genetic incompatibilities in allopatry.
    PLoS Genet. 2022;18:e1010353.
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    November 2022
  47. GAUR D, Kumar N, Ghosh A, Singh P, et al
    Ydj1 interaction at nucleotide-binding-domain of yeast Ssa1 impacts Hsp90 collaboration and client maturation.
    PLoS Genet. 2022;18:e1010442.
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  48. ABRAHAM A, LaBella AL, Capra JA, Rokas A, et al
    Mosaic patterns of selection in genomic regions associated with diverse human traits.
    PLoS Genet. 2022;18:e1010494.
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  49. WIBOWO AT, Antunez-Sanchez J, Dawson A, Price J, et al
    Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor.
    PLoS Genet. 2022;18:e1010479.
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    October 2022
  50. PORTER AF, Sherry N, Andersson P, Johnson SA, et al
    New rules for genomics-informed COVID-19 responses-Lessons learned from the first waves of the Omicron variant in Australia.
    PLoS Genet. 2022;18:e1010415.
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  51. FINN EH, Misteli T
    Nuclear position modulates long-range chromatin interactions.
    PLoS Genet. 2022;18:e1010451.
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  52. REHN J, Mayoh C, Heatley SL, McClure BJ, et al
    RaScALL: Rapid (Ra) screening (Sc) of RNA-seq data for prognostically significant genomic alterations in acute lymphoblastic leukaemia (ALL).
    PLoS Genet. 2022;18:e1010300.
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  53. XIA X, Zhang Y, Sun R, Wei Y, et al
    A Prism Vote method for individualized risk prediction of traits in genotype data of Multi-population.
    PLoS Genet. 2022;18:e1010443.
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    September 2022
  54. PARANJPE MD, Chaffin M, Zahid S, Ritchie S, et al
    Neurocognitive trajectory and proteomic signature of inherited risk for Alzheimer's disease.
    PLoS Genet. 2022;18:e1010294.
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  55. SACHDEVA H
    Reproductive isolation via polygenic local adaptation in sub-divided populations: Effect of linkage disequilibria and drift.
    PLoS Genet. 2022;18:e1010297.
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  56. BOCHER O, Ludwig TE, Oglobinsky MS, Marenne G, et al
    Testing for association with rare variants in the coding and non-coding genome: RAVA-FIRST, a new approach based on CADD deleteriousness score.
    PLoS Genet. 2022;18:e1009923.
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    August 2022
  57. GILLESPIE NA, Gentry AE, Kirkpatrick RM, Reynolds CA, et al
    Determining the stability of genome-wide factors in BMI between ages 40 to 69 years.
    PLoS Genet. 2022;18:e1010303.
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    July 2022
  58. XU S, Li G, Ye X, Chen D, et al
    HAP40 is a conserved central regulator of Huntingtin and a potential modulator of Huntington's disease pathogenesis.
    PLoS Genet. 2022;18:e1010302.
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  59. LIANG M, Shishkin M, Mikhailova A, Shchur V, et al
    Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium.
    PLoS Genet. 2022;18:e1010281.
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    June 2022
  60. SANCHEZ VC, Yang HH, Craig-Lucas A, Dubois W, et al
    Host CLIC4 expression in the tumor microenvironment is essential for breast cancer metastatic competence.
    PLoS Genet. 2022;18:e1010271.
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  61. ANDERSON H, Davison S, Lytle KM, Honkanen L, et al
    Genetic epidemiology of blood type, disease and trait variants, and genome-wide genetic diversity in over 11,000 domestic cats.
    PLoS Genet. 2022;18:e1009804.
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  62. BORDENSTEIN SR, Bordenstein SR
    Widespread phages of endosymbionts: Phage WO genomics and the proposed taxonomic classification of Symbioviridae.
    PLoS Genet. 2022;18:e1010227.
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  63. TOURNEBIZE R, Chu G, Moorjani P
    Reconstructing the history of founder events using genome-wide patterns of allele sharing across individuals.
    PLoS Genet. 2022;18:e1010243.
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  64. BARNADA SM, Isopi A, Tejada-Martinez D, Goubert C, et al
    Genomic features underlie the co-option of SVA transposons as cis-regulatory elements in human pluripotent stem cells.
    PLoS Genet. 2022;18:e1010225.
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    May 2022
  65. SMITH TE, Li Y, Perreau J, Moran NA, et al
    Elucidation of host and symbiont contributions to peptidoglycan metabolism based on comparative genomics of eight aphid subfamilies and their Buchnera.
    PLoS Genet. 2022;18:e1010195.
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  66. GIBSON G
    Perspectives on rigor and reproducibility in single cell genomics.
    PLoS Genet. 2022;18:e1010210.
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    April 2022
  67. OZIRMAK LERMI N, Gray SB, Bowen CM, Reyes-Uribe L, et al
    Comparative molecular genomic analyses of a spontaneous rhesus macaque model of mismatch repair-deficient colorectal cancer.
    PLoS Genet. 2022;18:e1010163.
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  68. ONETTO CA, Sosnowski MR, Van Den Heuvel S, Borneman AR, et al
    Population genomics of the grapevine pathogen Eutypa lata reveals evidence for population expansion and intraspecific differences in secondary metabolite gene clusters.
    PLoS Genet. 2022;18:e1010153.
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  69. DESBOIS M, Opperman KJ, Amezquita J, Gaglio G, et al
    Ubiquitin ligase activity inhibits Cdk5 to control axon termination.
    PLoS Genet. 2022;18:e1010152.
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  70. DEGIORGIO M, Szpiech ZA
    A spatially aware likelihood test to detect sweeps from haplotype distributions.
    PLoS Genet. 2022;18:e1010134.
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  71. BARRIOS N, Gonzalez-Lagos C, Dreger DL, Parker HG, et al
    Patagonian sheepdog: Genomic analyses trace the footprints of extinct UK herding dogs to South America.
    PLoS Genet. 2022;18:e1010160.
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  72. WANG C, Chen L, Chen Y, Jia W, et al
    Abnormal global alternative RNA splicing in COVID-19 patients.
    PLoS Genet. 2022;18:e1010137.
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    March 2022
  73. CILLINGOVA A, Toth R, Mojakova A, Zeman I, et al
    Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources.
    PLoS Genet. 2022;18:e1009815.
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  74. SATI S, Jones P, Kim HS, Zhou LA, et al
    HiCuT: An efficient and low input method to identify protein-directed chromatin interactions.
    PLoS Genet. 2022;18:e1010121.
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  75. KALMAR L, Gupta S, Kean IRL, Ba X, et al
    HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.
    PLoS Genet. 2022;18:e1009776.
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  76. YANG N, Srivastav SP, Rahman R, Ma Q, et al
    Transposable element landscapes in aging Drosophila.
    PLoS Genet. 2022;18:e1010024.
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    February 2022
  77. CHANGMAI P, Jaisamut K, Kampuansai J, Kutanan W, et al
    Indian genetic heritage in Southeast Asian populations.
    PLoS Genet. 2022;18:e1010036.
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  78. CAVEDON M, vonHoldt B, Hebblewhite M, Hegel T, et al
    Genomic legacy of migration in endangered caribou.
    PLoS Genet. 2022;18:e1009974.
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  79. HERNANDEZ-CASTRO LE, Villacis AG, Jacobs A, Cheaib B, et al
    Population genomics and geographic dispersal in Chagas disease vectors: Landscape drivers and evidence of possible adaptation to the domestic setting.
    PLoS Genet. 2022;18:e1010019.
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  80. JOHRI P, Stephan W, Jensen JD
    Soft selective sweeps: Addressing new definitions, evaluating competing models, and interpreting empirical outliers.
    PLoS Genet. 2022;18:e1010022.
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  81. CUEVAS A, Eroukhmanoff F, Ravinet M, Saetre GP, et al
    Predictors of genomic differentiation within a hybrid taxon.
    PLoS Genet. 2022;18:e1010027.
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    January 2022
  82. HOLLOMON JM, Liu Z, Rusin SF, Jenkins NP, et al
    The Candida albicans Cdk8-dependent phosphoproteome reveals repression of hyphal growth through a Flo8-dependent pathway.
    PLoS Genet. 2022;18:e1009622.
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  83. ALTINOGLU I, Abriat G, Carreaux A, Torres-Sanchez L, et al
    Analysis of HubP-dependent cell pole protein targeting in Vibrio cholerae uncovers novel motility regulators.
    PLoS Genet. 2022;18:e1009991.
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  84. HAN J, Munro JE, Kocoski A, Barry AE, et al
    Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species.
    PLoS Genet. 2022;18:e1009604.
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  85. TORRES-CAMPANA D, Horard B, Denaud S, Benoit G, et al
    Three classes of epigenomic regulators converge to hyperactivate the essential maternal gene deadhead within a heterochromatin mini-domain.
    PLoS Genet. 2022;18:e1009615.
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    December 2021
  86. BROWN TS, Arogbokun O, Buckee CO, Chang HH, et al
    Distinguishing gene flow between malaria parasite populations.
    PLoS Genet. 2021;17:e1009335.
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  87. POOK T, Nemri A, Gonzalez Segovia EG, Valle Torres D, et al
    Increasing calling accuracy, coverage, and read-depth in sequence data by the use of haplotype blocks.
    PLoS Genet. 2021;17:e1009944.
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    October 2021
  88. PERRIN HJ, Currin KW, Vadlamudi S, Pandey GK, et al
    Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci.
    PLoS Genet. 2021;17:e1009865.
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  89. HILL V, Akarsu H, Barbarroja RS, Cippa VL, et al
    Minimalistic mycoplasmas harbor different functional toxin-antitoxin systems.
    PLoS Genet. 2021;17:e1009365.
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  90. LEEB T
    Domestic animal genetics.
    PLoS Genet. 2021;17:e1009831.
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  91. ARNING N, Sheppard SK, Bayliss S, Clifton DA, et al
    Machine learning to predict the source of campylobacteriosis using whole genome data.
    PLoS Genet. 2021;17:e1009436.
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  92. STITZER MC, Anderson SN, Springer NM, Ross-Ibarra J, et al
    The genomic ecosystem of transposable elements in maize.
    PLoS Genet. 2021;17:e1009768.
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  93. GIRI A, Khaipho-Burch M, Buckler ES, Ramstein GP, et al
    Haplotype associated RNA expression (HARE) improves prediction of complex traits in maize.
    PLoS Genet. 2021;17:e1009568.
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    September 2021
  94. BRAULT V, Nguyen TL, Flores-Gutierrez J, Iacono G, et al
    Dyrk1a gene dosage in glutamatergic neurons has key effects in cognitive deficits observed in mouse models of MRD7 and Down syndrome.
    PLoS Genet. 2021;17:e1009777.
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  95. BOWDEN J, Pilling LC, Turkmen D, Kuo CL, et al
    The Triangulation WIthin a STudy (TWIST) framework for causal inference within pharmacogenetic research.
    PLoS Genet. 2021;17:e1009783.
    >> Share

  96. CLAERHOUT S, Verstraete P, Warnez L, Vanpaemel S, et al
    CSYseq: The first Y-chromosome sequencing tool typing a large number of Y-SNPs and Y-STRs to unravel worldwide human population genetics.
    PLoS Genet. 2021;17:e1009758.
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    August 2021
  97. DURAND R, Deschenes F, Burrus V
    Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids.
    PLoS Genet. 2021;17:e1009669.
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  98. NITA A, Matsumoto A, Tang R, Shiraishi C, et al
    A ubiquitin-like protein encoded by the "noncoding" RNA TINCR promotes keratinocyte proliferation and wound healing.
    PLoS Genet. 2021;17:e1009686.
    >> Share

  99. ELLIS DA, Reyes-Martin F, Rodriguez-Lopez M, Cotobal C, et al
    R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements.
    PLoS Genet. 2021;17:e1009784.
    >> Share

  100. SCHOTANUS K, Yadav V, Heitman J
    Epigenetic dynamics of centromeres and neocentromeres in Cryptococcus deuterogattii.
    PLoS Genet. 2021;17:e1009743.
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  101. VAN DAM MH, Cabras AA, Henderson JB, Rominger AJ, et al
    The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution.
    PLoS Genet. 2021;17:e1009745.
    >> Share

  102. FELDMANN MJ, Piepho HP, Bridges WC, Knapp SJ, et al
    Average semivariance yields accurate estimates of the fraction of marker-associated genetic variance and heritability in complex trait analyses.
    PLoS Genet. 2021;17:e1009762.
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  103. DEMETCI P, Cheng W, Darnell G, Zhou X, et al
    Multi-scale inference of genetic trait architecture using biologically annotated neural networks.
    PLoS Genet. 2021;17:e1009754.
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    July 2021
  104. MACK KL, Jaggard JB, Persons JL, Roback EY, et al
    Repeated evolution of circadian clock dysregulation in cavefish populations.
    PLoS Genet. 2021;17:e1009642.
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  105. AUDAIN E, Wilsdon A, Breckpot J, Izarzugaza JMG, et al
    Integrative analysis of genomic variants reveals new associations of candidate haploinsufficient genes with congenital heart disease.
    PLoS Genet. 2021;17:e1009679.
    >> Share

  106. WILLEMIN A, Lopez-Delisle L, Bolt CC, Gadolini ML, et al
    Induction of a chromatin boundary in vivo upon insertion of a TAD border.
    PLoS Genet. 2021;17:e1009691.
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  107. ROWAN TN, Durbin HJ, Seabury CM, Schnabel RD, et al
    Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle.
    PLoS Genet. 2021;17:e1009652.
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  108. FRANCOIS O, Gain C
    A spectral theory for Wright's inbreeding coefficients and related quantities.
    PLoS Genet. 2021;17:e1009665.
    >> Share

  109. CHEN PB, Flint J
    What connectomics can learn from genomics.
    PLoS Genet. 2021;17:e1009692.
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  110. WEIN T, Wang Y, Barz M, Stucker FT, et al
    Essential gene acquisition destabilizes plasmid inheritance.
    PLoS Genet. 2021;17:e1009656.
    >> Share

  111. XIA S, VanKuren NW, Chen C, Zhang L, et al
    Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development.
    PLoS Genet. 2021;17:e1009654.
    >> Share

    June 2021
  112. ZHU L, Fukunaga R
    RNA-binding protein Maca is crucial for gigantic male fertility factor gene expression, spermatogenesis, and male fertility, in Drosophila.
    PLoS Genet. 2021;17:e1009655.
    >> Share

  113. RESCAN M, Grulois D, Aboud EO, de Villemereuil P, et al
    Predicting population genetic change in an autocorrelated random environment: Insights from a large automated experiment.
    PLoS Genet. 2021;17:e1009611.
    >> Share

  114. FUCHS S, Kucklick M, Lehmann E, Beckmann A, et al
    Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach.
    PLoS Genet. 2021;17:e1009585.
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  115. ZHENG NS, Stone CA, Jiang L, Shaffer CM, et al
    High-throughput framework for genetic analyses of adverse drug reactions using electronic health records.
    PLoS Genet. 2021;17:e1009593.
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    May 2021
  116. WANG S, Li H, Song M, Tao Z, et al
    Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes.
    PLoS Genet. 2021;17:e1009557.
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  117. WHITING JR, Paris JR, van der Zee MJ, Parsons PJ, et al
    Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies.
    PLoS Genet. 2021;17:e1009566.
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  118. BOYS IN, Mar KB, Schoggins JW
    Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis.
    PLoS Genet. 2021;17:e1009578.
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  119. EVANS JM, Parker HG, Rutteman GR, Plassais J, et al
    Multi-omics approach identifies germline regulatory variants associated with hematopoietic malignancies in retriever dog breeds.
    PLoS Genet. 2021;17:e1009543.
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  120. HOSKENS H, Liu D, Naqvi S, Lee MK, et al
    3D facial phenotyping by biometric sibling matching used in contemporary genomic methodologies.
    PLoS Genet. 2021;17:e1009528.
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    April 2021
  121. FERRIS KG, Chavez AS, Suzuki TA, Beckman EJ, et al
    The genomics of rapid climatic adaptation and parallel evolution in North American house mice.
    PLoS Genet. 2021;17:e1009495.
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  122. GARCIA-BAYONA L, Coyne MJ, Comstock LE
    Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering.
    PLoS Genet. 2021;17:e1009541.
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    March 2021
  123. LUCEK K, Willi Y
    Drivers of linkage disequilibrium across a species' geographic range.
    PLoS Genet. 2021;17:e1009477.
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  124. CARNEIRO M, Vieillard J, Andrade P, Boucher S, et al
    A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits.
    PLoS Genet. 2021;17:e1009429.
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  125. LI J, Sun L, Peng XL, Yu XM, et al
    Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons.
    PLoS Genet. 2021;17:e1009355.
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  126. WILLIS K, Burt A
    Double drives and private alleles for localised population genetic control.
    PLoS Genet. 2021;17:e1009333.
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  127. MOLLER M, Habig M, Lorrain C, Feurtey A, et al
    Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.
    PLoS Genet. 2021;17:e1009448.
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  128. HANNON E, Mansell G, Walker E, Nabais MF, et al
    Assessing the co-variability of DNA methylation across peripheral cells and tissues: Implications for the interpretation of findings in epigenetic epidemiology.
    PLoS Genet. 2021;17:e1009443.
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  129. KORUNES KL, Goldberg A
    Human genetic admixture.
    PLoS Genet. 2021;17:e1009374.
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  130. KERMINEN S, Cerioli N, Pacauskas D, Havulinna AS, et al
    Changes in the fine-scale genetic structure of Finland through the 20th century.
    PLoS Genet. 2021;17:e1009347.
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  131. WALKER CR, Scally A, De Maio N, Goldman N, et al
    Short-range template switching in great ape genomes explored using pair hidden Markov models.
    PLoS Genet. 2021;17:e1009221.
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    February 2021
  132. GARUD NR, Messer PW, Petrov DA
    Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data.
    PLoS Genet. 2021;17:e1009373.
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  133. LIU N, Xu J, Liu H, Zhang S, et al
    Hippocampal transcriptome-wide association study and neurobiological pathway analysis for Alzheimer's disease.
    PLoS Genet. 2021;17:e1009363.
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  134. ANDRADE P, Gazda MA, Araujo PM, Afonso S, et al
    Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates.
    PLoS Genet. 2021;17:e1009404.
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  135. BROVKINA MV, Duffie R, Burtis AEC, Clowney EJ, et al
    Fruitless decommissions regulatory elements to implement cell-type-specific neuronal masculinization.
    PLoS Genet. 2021;17:e1009338.
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  136. YU MHC, Chan MCY, Chung CCY, Li AWT, et al
    Actionable pharmacogenetic variants in Hong Kong Chinese exome sequencing data and projected prescription impact in the Hong Kong population.
    PLoS Genet. 2021;17:e1009323.
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  137. LENZ J, Liefke R, Funk J, Shoup S, et al
    Ush regulates hemocyte-specific gene expression, fatty acid metabolism and cell cycle progression and cooperates with dNuRD to orchestrate hematopoiesis.
    PLoS Genet. 2021;17:e1009318.
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  138. LANGNER T, Harant A, Gomez-Luciano LB, Shrestha RK, et al
    Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus.
    PLoS Genet. 2021;17:e1009386.
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  139. ZHANG JL, Fu SJ, Chen SJ, Chen HH, et al
    Vestigial mediates the effect of insulin signaling pathway on wing-morph switching in planthoppers.
    PLoS Genet. 2021;17:e1009312.
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  140. YELMEN B, Decelle A, Ongaro L, Marnetto D, et al
    Creating artificial human genomes using generative neural networks.
    PLoS Genet. 2021;17:e1009303.
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  141. ZHANG W, Huang J, Cook DE
    Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae.
    PLoS Genet. 2021;17:e1009376.
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  142. FARRIS J, Alam MS, Rajashekara AM, Haldar K, et al
    Genomic analyses of glycine decarboxylase neurogenic mutations yield a large-scale prediction model for prenatal disease.
    PLoS Genet. 2021;17:e1009307.
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    January 2021
  143. VY HMT, Jordan DM, Balick DJ, Do R, et al
    Probing the aggregated effects of purifying selection per individual on 1,380 medical phenotypes in the UK Biobank.
    PLoS Genet. 2021;17:e1009337.
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  144. WIETERS B, Steige KA, He F, Koch EM, et al
    Polygenic adaptation of rosette growth in Arabidopsis thaliana.
    PLoS Genet. 2021;17:e1008748.
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  145. OCHOA A, Storey JD
    Estimating FST and kinship for arbitrary population structures.
    PLoS Genet. 2021;17:e1009241.
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  146. FEDER AF, Pennings PS, Petrov DA
    The clarifying role of time series data in the population genetics of HIV.
    PLoS Genet. 2021;17:e1009050.
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  147. SAINI N, Giacobone CK, Klimczak LJ, Papas BN, et al
    UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin.
    PLoS Genet. 2021;17:e1009302.
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  148. MONNAHAN PJ, Colicchio J, Fishman L, Macdonald SJ, et al
    Predicting evolutionary change at the DNA level in a natural Mimulus population.
    PLoS Genet. 2021;17:e1008945.
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  149. MINETA K, Goto K, Gojobori T, Alkuraya FS, et al
    Population structure of indigenous inhabitants of Arabia.
    PLoS Genet. 2021;17:e1009210.
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  150. LEHMAN BJ, Lopez-Diaz FJ, Santisakultarm TP, Fang L, et al
    Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress.
    PLoS Genet. 2021;17:e1009277.
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    December 2020
  151. SCHWABL P, Maiguashca Sanchez J, Costales JA, Ocana-Mayorga S, et al
    Culture-free genome-wide locus sequence typing (GLST) provides new perspectives on Trypanosoma cruzi dispersal and infection complexity.
    PLoS Genet. 2020;16:e1009170.
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  152. SWAN AL, Schutt C, Rozman J, Del Mar Muniz Moreno M, et al
    Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density.
    PLoS Genet. 2020;16:e1009190.
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    November 2020
  153. BALACHANDRA VK, Verma J, Shankar M, Tucey TM, et al
    The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits.
    PLoS Genet. 2020;16:e1009071.
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  154. LECA I, Phillips AW, Hofer I, Landler L, et al
    A proteomic survey of microtubule-associated proteins in a R402H TUBA1A mutant mouse.
    PLoS Genet. 2020;16:e1009104.
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  155. GOLDSTEIN JA, Weinstock JS, Bastarache LA, Larach DB, et al
    LabWAS: Novel findings and study design recommendations from a meta-analysis of clinical labs in two independent biobanks.
    PLoS Genet. 2020;16:e1009077.
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  156. DIOFANO F, Weinmann K, Schneider I, Thiessen KD, et al
    Genetic compensation prevents myopathy and heart failure in an in vivo model of Bag3 deficiency.
    PLoS Genet. 2020;16:e1009088.
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    October 2020
  157. WATSON JA, Taylor AR, Ashley EA, Dondorp A, et al
    A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices.
    PLoS Genet. 2020;16:e1009037.
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  158. QIAN J, Tanigawa Y, Du W, Aguirre M, et al
    A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank.
    PLoS Genet. 2020;16:e1009141.
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  159. ZHANG W, Schoenebeck JJ
    The ninth life of the cat reference genome, Felis_catus.
    PLoS Genet. 2020;16:e1009045.
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  160. BROWN DW, Lin SH, Loh PR, Chanock SJ, et al
    Genetically predicted telomere length is associated with clonal somatic copy number alterations in peripheral leukocytes.
    PLoS Genet. 2020;16:e1009078.
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  161. BUCKLEY RM, Davis BW, Brashear WA, Farias FHG, et al
    A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism.
    PLoS Genet. 2020;16:e1008926.
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  162. ATZINGER A, Lawrence JG
    Selection for ancient periodic motifs that do not impart DNA bending.
    PLoS Genet. 2020;16:e1009042.
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  163. BOURGEOIS Y, Ruggiero RP, Hariyani I, Boissinot S, et al
    Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations.
    PLoS Genet. 2020;16:e1009082.
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  164. DIAZ-SANTIAGO E, Jabato FM, Rojano E, Seoane P, et al
    Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases.
    PLoS Genet. 2020;16:e1009054.
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    September 2020
  165. GROSS C, Bortoluzzi C, de Ridder D, Megens HJ, et al
    Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD.
    PLoS Genet. 2020;16:e1009027.
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  166. SUMMERS DK, Perry DS, Rao B, Madhani HD, et al
    Coordinate genomic association of transcription factors controlled by an imported quorum sensing peptide in Cryptococcus neoformans.
    PLoS Genet. 2020;16:e1008744.
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  167. MULLEN DJ, Yan C, Kang DS, Zhou B, et al
    TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma.
    PLoS Genet. 2020;16:e1009023.
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  168. DESHPANDE O, Lara RZ, Zhang OR, Concepcion D, et al
    ZNF423 patient variants, truncations, and in-frame deletions in mice define an allele-dependent range of midline brain abnormalities.
    PLoS Genet. 2020;16:e1009017.
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  169. ALI MB, Evans JM, Parker HG, Kim J, et al
    Genetic analysis of the modern Australian labradoodle dog breed reveals an excess of the poodle genome.
    PLoS Genet. 2020;16:e1008956.
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  170. STRUNZ T, Kiel C, Grassmann F, Ratnapriya R, et al
    A mega-analysis of expression quantitative trait loci in retinal tissue.
    PLoS Genet. 2020;16:e1008934.
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  171. STEIN V, Blank-Landeshammer B, Muntjes K, Marker R, et al
    The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes.
    PLoS Genet. 2020;16:e1008819.
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