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Articles published in
PLoS Comput Biol
    June 2025
  1. CHEN S, Venkatesan S, Arnetorp S, Bergenheim K, et al
    Features influencing the health and economic impact of preventing COVID-19 in immunocompromised individuals.
    PLoS Comput Biol. 2025;21:e1013072.
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    May 2025
  2. POLCZ P, Reguly IZ, Tornai K, Juhasz J, et al
    Smart epidemic control: A hybrid model blending ODEs and agent-based simulations for optimal, real-world intervention planning.
    PLoS Comput Biol. 2025;21:e1013028.
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  3. MEDINA CM, Palacios JA, Minin VM
    Accounting for reporting delays in real-time phylodynamic analyses with preferential sampling.
    PLoS Comput Biol. 2025;21:e1012970.
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    April 2025
  4. WU L, Baker CM, Tierney N, Carville K, et al
    Quantifying the impact of contact tracing interview prioritisation strategies on disease transmission: A modelling study.
    PLoS Comput Biol. 2025;21:e1012906.
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  5. POZZATI G, Flores SC
    Combining flipped-classroom and spaced-repetition learning in a master-level bioinformatics course.
    PLoS Comput Biol. 2025;21:e1012863.
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  6. TEOH YC, Noor MS, Aghakhani S, Girton J, et al
    Viral escape-inspired framework for structure-guided dual bait protein biosensor design.
    PLoS Comput Biol. 2025;21:e1012964.
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  7. HODCROFT EB, Wohlfender MS, Neher RA, Riou J, et al
    Estimating Re and overdispersion in secondary cases from the size of identical sequence clusters of SARS-CoV-2.
    PLoS Comput Biol. 2025;21:e1012960.
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  8. GROTBERG JB, Romano F, Grotberg JC
    Flow mechanisms of the air-blood barrier.
    PLoS Comput Biol. 2025;21:e1012917.
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  9. FERRAZ MVF, Adan WCS, Lima TE, Santos AJC, et al
    Design of nanobody targeting SARS-CoV-2 spike glycoprotein using CDR-grafting assisted by molecular simulation and machine learning.
    PLoS Comput Biol. 2025;21:e1012921.
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  10. ZHANG R, Tai J, Yao Q, Yang W, et al
    Behavior-driven forecasts of neighborhood-level COVID-19 spread in New York City.
    PLoS Comput Biol. 2025;21:e1012979.
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    March 2025
  11. EALES O, Shearer FM, McCaw JM
    How immunity shapes the long-term dynamics of influenza H3N2.
    PLoS Comput Biol. 2025;21:e1012893.
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  12. AMARAL AVR, Wolffram D, Moraga P, Bracher J, et al
    Post-processing and weighted combination of infectious disease nowcasts.
    PLoS Comput Biol. 2025;21:e1012836.
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  13. VON HOENE E, Roess A, Kavak H, Anderson T, et al
    Synthetic population generation with public health characteristics for spatial agent-based models.
    PLoS Comput Biol. 2025;21:e1012439.
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  14. WANG M, Patsenker J, Li H, Kluger Y, et al
    Supervised fine-tuning of pre-trained antibody language models improves antigen specificity prediction.
    PLoS Comput Biol. 2025;21:e1012153.
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    February 2025
  15. BANHOLZER N, Middelkoop K, Leukes J, Weingartner E, et al
    Estimating Mycobacterium tuberculosis transmission in a South African clinic: Spatiotemporal model based on person movements.
    PLoS Comput Biol. 2025;21:e1012823.
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  16. LOMBARD B, Moultrie H, Pulliam JRC, van Schalkwyk C, et al
    Simulation-based validation of a method to detect changes in SARS-CoV-2 reinfection risk.
    PLoS Comput Biol. 2025;21:e1012792.
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  17. LI W, Chen X, Liu S, Zhang C, et al
    Using a multi-strain infectious disease model with physical information neural networks to study the time dependence of SARS-CoV-2 variants of concern.
    PLoS Comput Biol. 2025;21:e1012778.
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  18. SIMPSON J, Kasson PM
    Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses.
    PLoS Comput Biol. 2025;21:e1012812.
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  19. SHEN X, Rumack A, Wilder B, Tibshirani RJ, et al
    Nowcasting reported covid-19 hospitalizations using de-identified, aggregated medical insurance claims data.
    PLoS Comput Biol. 2025;21:e1012717.
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  20. GAO S, Chakraborty AK, Greiner R, Lewis MA, et al
    Early detection of disease outbreaks and non-outbreaks using incidence data: A framework using feature-based time series classification and machine learning.
    PLoS Comput Biol. 2025;21:e1012782.
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  21. CASABURI P, Dall'Amico L, Gozzi N, Kalimeri K, et al
    Resilience of mobility network to dynamic population response across COVID-19 interventions: Evidences from Chile.
    PLoS Comput Biol. 2025;21:e1012802.
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  22. ZHAN X, Xu Q, Zheng Y, Lu G, et al
    Reliability-enhanced data cleaning in biomedical machine learning using inductive conformal prediction.
    PLoS Comput Biol. 2025;21:e1012803.
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    January 2025
  23. BADROU A, Mariano CA, Ramirez GO, Shankel M, et al
    Towards constructing a generalized structural 3D breathing human lung model based on experimental volumes, pressures, and strains.
    PLoS Comput Biol. 2025;21:e1012680.
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  24. BOTTCHER L, D'Orsogna MR, Chou T
    Aggregating multiple test results to improve medical decision-making.
    PLoS Comput Biol. 2025;21:e1012749.
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    December 2024
  25. ABRAHAM AA, Tan ZC, Shrestha P, Bozich ER, et al
    A multivalent binding model infers antibody Fc species from systems serology.
    PLoS Comput Biol. 2024;20:e1012663.
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  26. ZAARAOUI H, Schumer C, Duval X, Hoen B, et al
    Modelling the effectiveness of antiviral treatment strategies to prevent household transmission of acute respiratory viruses.
    PLoS Comput Biol. 2024;20:e1012573.
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  27. CALMON L, Colosi E, Bassignana G, Barrat A, et al
    Preserving friendships in school contacts: An algorithm to construct synthetic temporal networks for epidemic modelling.
    PLoS Comput Biol. 2024;20:e1012661.
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  28. FAJARDO-FONTIVEROS O, Mattei M, Burgio G, Granell C, et al
    Machine learning mathematical models for incidence estimation during pandemics.
    PLoS Comput Biol. 2024;20:e1012687.
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  29. ZHANG XY, Yu LL, Wang WY, Sun GQ, et al
    Estimating the time-varying effective reproduction number via Cycle Threshold-based Transformer.
    PLoS Comput Biol. 2024;20:e1012694.
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  30. ZUNKER H, Schmieding R, Kerkmann D, Schengen A, et al
    Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios.
    PLoS Comput Biol. 2024;20:e1012630.
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  31. CHERIAN P, Kshirsagar J, Neekhra B, Deshkar G, et al
    BharatSim: An agent-based modelling framework for India.
    PLoS Comput Biol. 2024;20:e1012682.
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    November 2024
  32. SHE B, Smith RL, Pytlarz I, Sundaram S, et al
    A framework for counterfactual analysis, strategy evaluation, and control of epidemics using reproduction number estimates.
    PLoS Comput Biol. 2024;20:e1012569.
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    October 2024
  33. XIA F, Xiao Y, Ma J
    The optimal spatially-dependent control measures to effectively and economically eliminate emerging infectious diseases.
    PLoS Comput Biol. 2024;20:e1012498.
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  34. MATHEBULA D, Amankwah A, Amouzouvi K, Assamagan KA, et al
    Modelling the impact of vaccination on COVID-19 in African countries.
    PLoS Comput Biol. 2024;20:e1012456.
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  35. ANDRONICO A, Paireau J, Cauchemez S
    Integrating information from historical data into mechanistic models for influenza forecasting.
    PLoS Comput Biol. 2024;20:e1012523.
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    September 2024
  36. JIANG J, Meng X, Wang Y, Zhuang Z, et al
    Effect of aberrant fructose metabolism following SARS-CoV-2 infection on colorectal cancer patients' poor prognosis.
    PLoS Comput Biol. 2024;20:e1012412.
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  37. ABOUSAMRA E, Figgins M, Bedford T
    Fitness models provide accurate short-term forecasts of SARS-CoV-2 variant frequency.
    PLoS Comput Biol. 2024;20:e1012443.
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  38. OLIVEIRA ROSTER KI, Kissler SM, Omoregie E, Wang JC, et al
    Surveillance strategies for the detection of new pathogen variants across epidemiological contexts.
    PLoS Comput Biol. 2024;20:e1012416.
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  39. MILLEVOI C, Pasetto D, Ferronato M
    A Physics-Informed Neural Network approach for compartmental epidemiological models.
    PLoS Comput Biol. 2024;20:e1012387.
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  40. LI K, Chaguza C, Stamp J, Chew YT, et al
    Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
    PLoS Comput Biol. 2024;20:e1012469.
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  41. TANG B, Ma K, Liu Y, Wang X, et al
    Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: A mechanistic and deep learning study.
    PLoS Comput Biol. 2024;20:e1012497.
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  42. KUMAGAI Y
    BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks.
    PLoS Comput Biol. 2024;20:e1012480.
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  43. KEELING MJ, Dyson L
    A retrospective assessment of forecasting the peak of the SARS-CoV-2 Omicron BA.1 wave in England.
    PLoS Comput Biol. 2024;20:e1012452.
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    August 2024
  44. BOUROS I, Hill EM, Keeling MJ, Moore S, et al
    Prioritising older individuals for COVID-19 booster vaccination leads to optimal public health outcomes in a range of socio-economic settings.
    PLoS Comput Biol. 2024;20:e1012309.
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  45. SAAD-ROY CM, Morris SE, Boots M, Baker RE, et al
    Impact of waning immunity against SARS-CoV-2 severity exacerbated by vaccine hesitancy.
    PLoS Comput Biol. 2024;20:e1012211.
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  46. LIN J, Aprahamian H, Golovko G
    A proactive/reactive mass screening approach with uncertain symptomatic cases.
    PLoS Comput Biol. 2024;20:e1012308.
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  47. BOLAJI AJ, Duggan AT
    In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.
    PLoS Comput Biol. 2024;20:e1011539.
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    July 2024
  48. LAU YC, Shan S, Wang D, Chen D, et al
    Forecasting of influenza activity and associated hospital admission burden and estimating the impact of COVID-19 pandemic on 2019/20 winter season in Hong Kong.
    PLoS Comput Biol. 2024;20:e1012311.
    >> Share

  49. DOYLE NJ, Cumming F, Thompson RN, Tildesley MJ, et al
    When should lockdown be implemented? Devising cost-effective strategies for managing epidemics amid vaccine uncertainty.
    PLoS Comput Biol. 2024;20:e1012010.
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  50. ROSENBLATT E, Cook JD, DiRenzo GV, Grant EHC, et al
    Epidemiological modeling of SARS-CoV-2 in white-tailed deer (Odocoileus virginianus) reveals conditions for introduction and widespread transmission.
    PLoS Comput Biol. 2024;20:e1012263.
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  51. GABERNET G, Marquez S, Bjornson R, Peltzer A, et al
    nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
    PLoS Comput Biol. 2024;20:e1012265.
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    June 2024
  52. HILL EM, Petrou S, de Lusignan S, Yonova I, et al
    Correction: Seasonal influenza: Modelling approaches to capture immunity propagation.
    PLoS Comput Biol. 2024;20:e1012213.
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  53. ROJAS CHAVEZ RA, Fili M, Han C, Rahman SA, et al
    Mapping the Evolutionary Space of SARS-CoV-2 Variants to Anticipate Emergence of Subvariants Resistant to COVID-19 Therapeutics.
    PLoS Comput Biol. 2024;20:e1012215.
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  54. SHUBIN M, Brustad HK, Midtbo JE, Gunther F, et al
    The influence of cross-border mobility on the COVID-19 epidemic in Nordic countries.
    PLoS Comput Biol. 2024;20:e1012182.
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  55. SALWIG S, Drefs J, Lucke J
    Zero-shot denoising of microscopy images recorded at high-resolution limits.
    PLoS Comput Biol. 2024;20:e1012192.
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    May 2024
  56. HLADISH TJ, Pillai AN, Pearson CAB, Toh KB, et al
    Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.
    PLoS Comput Biol. 2024;20:e1012128.
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  57. LOPEZ VK, Cramer EY, Pagano R, Drake JM, et al
    Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
    PLoS Comput Biol. 2024;20:e1011200.
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  58. ASPLIN P, Keeling MJ, Mancy R, Hill EM, et al
    Epidemiological and health economic implications of symptom propagation in respiratory pathogens: A mathematical modelling investigation.
    PLoS Comput Biol. 2024;20:e1012096.
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  59. TRINITY L, Stege U, Jabbari H
    Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.
    PLoS Comput Biol. 2024;20:e1011787.
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  60. FOSTER ZSL, Tupper AS, Press CM, Grunwald NJ, et al
    Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data.
    PLoS Comput Biol. 2024;20:e1012139.
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  61. MASSEY A, Boennec C, Restrepo-Ortiz CX, Blanchet C, et al
    Real-time forecasting of COVID-19-related hospital strain in France using a non-Markovian mechanistic model.
    PLoS Comput Biol. 2024;20:e1012124.
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  62. RAWSON T, Hinsley W, Sonabend R, Semenova E, et al
    The impact of health inequity on spatial variation of COVID-19 transmission in England.
    PLoS Comput Biol. 2024;20:e1012141.
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    April 2024
  63. BENISTON E, Skittrall JP
    Locations and structures of influenza A virus packaging-associated signals and other functional elements via an in silico pipeline for predicting constrained features in RNA viruses.
    PLoS Comput Biol. 2024;20:e1012009.
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  64. LISON A, Abbott S, Huisman J, Stadler T, et al
    Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates.
    PLoS Comput Biol. 2024;20:e1012021.
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  65. BOUMAN JA, Hauser A, Grimm SL, Wohlfender M, et al
    Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models.
    PLoS Comput Biol. 2024;20:e1011575.
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    March 2024
  66. SHAO Y, Magee AF, Vasylyeva TI, Suchard MA, et al
    Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models.
    PLoS Comput Biol. 2024;20:e1011640.
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  67. JIJON S, Czuppon P, Blanquart F, Debarre F, et al
    Using early detection data to estimate the date of emergence of an epidemic outbreak.
    PLoS Comput Biol. 2024;20:e1011934.
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  68. HASSE T, Mantei E, Shahoei R, Pawnikar S, et al
    Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein.
    PLoS Comput Biol. 2024;20:e1011955.
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  69. PUNG R, Russell TW, Kucharski AJ
    Detecting changes in generation and serial intervals under varying pathogen biology, contact patterns and outbreak response.
    PLoS Comput Biol. 2024;20:e1011967.
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  70. ATAMER BALKAN B, Chang Y, Sparnaaij M, Wouda B, et al
    The multi-dimensional challenges of controlling respiratory virus transmission in indoor spaces: Insights from the linkage of a microscopic pedestrian simulation and SARS-CoV-2 transmission model.
    PLoS Comput Biol. 2024;20:e1011956.
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    January 2024
  71. CHAN LYH, Ro G, Midtbo JE, Di Ruscio F, et al
    Modeling geographic vaccination strategies for COVID-19 in Norway.
    PLoS Comput Biol. 2024;20:e1011426.
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  72. SHIN B, An G, Cockrell RC
    Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model.
    PLoS Comput Biol. 2024;20:e1011776.
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  73. GRUNNILL M, Arino J, McCarthy Z, Bragazzi NL, et al
    Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup.
    PLoS Comput Biol. 2024;20:e1011018.
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  74. PLANK MJ, Watson L, Maclaren OJ
    Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand.
    PLoS Comput Biol. 2024;20:e1011752.
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  75. RAMACHANDRAN A, Lumetta SS, Chen D
    PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning.
    PLoS Comput Biol. 2024;20:e1011790.
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  76. VAN BOVEN M, van Dorp CH, Westerhof I, Jaddoe V, et al
    Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study.
    PLoS Comput Biol. 2024;20:e1011832.
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  77. LAMB KD, Luka MM, Saathoff M, Orton RJ, et al
    Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.
    PLoS Comput Biol. 2024;20:e1011795.
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    December 2023
  78. MOREL JD, Morel JM, Alvarez L
    Time warping between main epidemic time series in epidemiological surveillance.
    PLoS Comput Biol. 2023;19:e1011757.
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  79. JOHNSON KE, Pasco R, Woody S, Lachmann M, et al
    Optimizing COVID-19 testing strategies on college campuses: Evaluation of the health and economic costs.
    PLoS Comput Biol. 2023;19:e1011715.
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  80. ISLAM MA, Getz M, Macklin P, Ford Versypt AN, et al
    An agent-based modeling approach for lung fibrosis in response to COVID-19.
    PLoS Comput Biol. 2023;19:e1011741.
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    November 2023
  81. ALAHAKOON P, Taylor PG, McCaw JM
    How effective were Australian Quarantine Stations in mitigating transmission aboard ships during the influenza pandemic of 1918-19?
    PLoS Comput Biol. 2023;19:e1011656.
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  82. DRAKE JM, Handel A, Marty E, O'Dea EB, et al
    A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States.
    PLoS Comput Biol. 2023;19:e1011610.
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  83. WOOD AJ, Sanchez AR, Bessell PR, Wightman R, et al
    Assessing the importance of demographic risk factors across two waves of SARS-CoV-2 using fine-scale case data.
    PLoS Comput Biol. 2023;19:e1011611.
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  84. BROCKHAUS EK, Wolffram D, Stadler T, Osthege M, et al
    Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany.
    PLoS Comput Biol. 2023;19:e1011653.
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  85. VAN DER ROEST BR, Bootsma MCJ, Fischer EAJ, Klinkenberg D, et al
    A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms.
    PLoS Comput Biol. 2023;19:e1010928.
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  86. WARD T, Morris M, Gelman A, Carpenter B, et al
    Bayesian spatial modelling of localised SARS-CoV-2 transmission through mobility networks across England.
    PLoS Comput Biol. 2023;19:e1011580.
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    October 2023
  87. HE M, Tang S, Xiao Y
    Combining the dynamic model and deep neural networks to identify the intensity of interventions during COVID-19 pandemic.
    PLoS Comput Biol. 2023;19:e1011535.
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    September 2023
  88. ZHOU Z, Li D, Zhao Z, Shi S, et al
    Dynamical modelling of viral infection and cooperative immune protection in COVID-19 patients.
    PLoS Comput Biol. 2023;19:e1011383.
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  89. ZHANG K, Xia Z, Huang S, Sun GQ, et al
    Evaluating the impact of test-trace-isolate for COVID-19 management and alternative strategies.
    PLoS Comput Biol. 2023;19:e1011423.
    >> Share

  90. MUNDAY JD, Abbott S, Meakin S, Funk S, et al
    Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England.
    PLoS Comput Biol. 2023;19:e1011453.
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  91. OVERTON CE, Abbott S, Christie R, Cumming F, et al
    Nowcasting the 2022 mpox outbreak in England.
    PLoS Comput Biol. 2023;19:e1011463.
    >> Share

  92. WANG Z, Wu P, Wang L, Li B, et al
    Marginal effects of public health measures and COVID-19 disease burden in China: A large-scale modelling study.
    PLoS Comput Biol. 2023;19:e1011492.
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    August 2023
  93. MORRIS M, Hayes P, Cox IJ, Lampos V, et al
    Neural network models for influenza forecasting with associated uncertainty using Web search activity trends.
    PLoS Comput Biol. 2023;19:e1011392.
    >> Share

  94. CLAIRON Q, Prague M, Planas D, Bruel T, et al
    Modeling the kinetics of the neutralizing antibody response against SARS-CoV-2 variants after several administrations of Bnt162b2.
    PLoS Comput Biol. 2023;19:e1011282.
    >> Share

  95. WOLFFRAM D, Abbott S, An der Heiden M, Funk S, et al
    Collaborative nowcasting of COVID-19 hospitalization incidences in Germany.
    PLoS Comput Biol. 2023;19:e1011394.
    >> Share

  96. RAACH B, Bundgaard N, Haase MJ, Starruss J, et al
    Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium.
    PLoS Comput Biol. 2023;19:e1011356.
    >> Share

  97. YEDIDYA Y, Davis D, Drier Y
    SARS-CoV-2 infection perturbs enhancer mediated transcriptional regulation of key pathways.
    PLoS Comput Biol. 2023;19:e1011397.
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  98. MARC A, Marlin R, Donati F, Prague M, et al
    Impact of variants of concern on SARS-CoV-2 viral dynamics in non-human primates.
    PLoS Comput Biol. 2023;19:e1010721.
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  99. BOSSE NI, Abbott S, Cori A, van Leeuwen E, et al
    Scoring epidemiological forecasts on transformed scales.
    PLoS Comput Biol. 2023;19:e1011393.
    >> Share

  100. NASH RK, Bhatt S, Cori A, Nouvellet P, et al
    Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
    PLoS Comput Biol. 2023;19:e1011439.
    >> Share

    July 2023
  101. SERVADIO JL, Thai PQ, Choisy M, Boni MF, et al
    Repeatability and timing of tropical influenza epidemics.
    PLoS Comput Biol. 2023;19:e1011317.
    >> Share

  102. LOU S, Yang M, Li T, Zhao W, et al
    Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.
    PLoS Comput Biol. 2023;19:e1011222.
    >> Share

  103. ANDRESS C, Kappel K, Villena ME, Cuperlovic-Culf M, et al
    DAPTEV: Deep aptamer evolutionary modelling for COVID-19 drug design.
    PLoS Comput Biol. 2023;19:e1010774.
    >> Share

  104. PARAG KV, Obolski U
    Risk averse reproduction numbers improve resurgence detection.
    PLoS Comput Biol. 2023;19:e1011332.
    >> Share

  105. YANG W, Shaman J
    Development of Accurate Long-lead COVID-19 Forecast.
    PLoS Comput Biol. 2023;19:e1011278.
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    June 2023
  106. FOX SJ, Javan E, Pasco R, Gibson GC, et al
    Disproportionate impacts of COVID-19 in a large US city.
    PLoS Comput Biol. 2023;19:e1011149.
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  107. DAN S, Chen Y, Chen Y, Monod M, et al
    Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model.
    PLoS Comput Biol. 2023;19:e1011191.
    >> Share

  108. MOREL JD, Morel JM, Alvarez L
    Learning from the past: A short term forecast method for the COVID-19 incidence curve.
    PLoS Comput Biol. 2023;19:e1010790.
    >> Share

  109. XIONG YX, Wang MG, Chen L, Zhang XF, et al
    Cell-type annotation with accurate unseen cell-type identification using multiple references.
    PLoS Comput Biol. 2023;19:e1011261.
    >> Share

  110. BRETT TS, Bansal S, Rohani P
    Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state.
    PLoS Comput Biol. 2023;19:e1011263.
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    May 2023
  111. MICHALSKI M, Setny P
    Two modes of fusogenic action for influenza virus fusion peptide.
    PLoS Comput Biol. 2023;19:e1011174.
    >> Share

  112. SPERRY MM, Oskotsky TT, Maric I, Kaushal S, et al
    Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients.
    PLoS Comput Biol. 2023;19:e1011050.
    >> Share

  113. IYANIWURA SA, Ringa N, Adu PA, Mak S, et al
    Understanding the impact of mobility on COVID-19 spread: A hybrid gravity-metapopulation model of COVID-19.
    PLoS Comput Biol. 2023;19:e1011123.
    >> Share

  114. GHOSH S, Birrell PJ, De Angelis D
    An approximate diffusion process for environmental stochasticity in infectious disease transmission modelling.
    PLoS Comput Biol. 2023;19:e1011088.
    >> Share

  115. SEKAR RV, Oliva PJ, Woodside MT
    Modelling the structures of frameshift-stimulatory pseudoknots from representative bat coronaviruses.
    PLoS Comput Biol. 2023;19:e1011124.
    >> Share

  116. SUNAGAWA J, Komorizono R, Park H, Hart WS, et al
    Contact-number-driven virus evolution: A multi-level modeling framework for the evolution of acute or persistent RNA virus infection.
    PLoS Comput Biol. 2023;19:e1011173.
    >> Share

    April 2023
  117. ZHAO C, Zhang J, Hou X, Yeung CH, et al
    A high-frequency mobility big-data reveals how COVID-19 spread across professions, locations and age groups.
    PLoS Comput Biol. 2023;19:e1011083.
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    March 2023
  118. HARVEY WT, Davies V, Daniels RS, Whittaker L, et al
    A Bayesian approach to incorporate structural data into the mapping of genotype to antigenic phenotype of influenza A(H3N2) viruses.
    PLoS Comput Biol. 2023;19:e1010885.
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  119. MURGA A, Bale R, Li CG, Ito K, et al
    Large eddy simulation of droplet transport and deposition in the human respiratory tract to evaluate inhalation risk.
    PLoS Comput Biol. 2023;19:e1010972.
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  120. DAUTEL KA, Agyingi E, Pathmanathan P
    Validation framework for epidemiological models with application to COVID-19 models.
    PLoS Comput Biol. 2023;19:e1010968.
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  121. LEONIDOU N, Renz A, Mostolizadeh R, Drager A, et al
    New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells.
    PLoS Comput Biol. 2023;19:e1010903.
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  122. CAPPELLO L, Kim J, Palacios JA
    adaPop: Bayesian inference of dependent population dynamics in coalescent models.
    PLoS Comput Biol. 2023;19:e1010897.
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    February 2023
  123. HAW DJ, Biggerstaff M, Prasad P, Walker J, et al
    Using real-time data to guide decision-making during an influenza pandemic: A modelling analysis.
    PLoS Comput Biol. 2023;19:e1010893.
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  124. NIELSEN BF, Saad-Roy CM, Li Y, Sneppen K, et al
    Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2.
    PLoS Comput Biol. 2023;19:e1010896.
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  125. TRINITY L, Wark I, Lansing L, Jabbari H, et al
    Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.
    PLoS Comput Biol. 2023;19:e1010922.
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