October 2025
1. YUKAWA K, Harada S, Komori K, Hayama B, et al
   Corynebacterium striatum infections in oncologic patients: clinical spectrum, resistance profiles, and evidence of nosocomial transmission.
   J Clin Microbiol. 2025;63:e0082925.
   

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2. ARMSTRONG DT, Baird ECE, Pretty L, D'Agostino K, et al
   Diagnostics and new treatment regimens for TB: can the Xpert MTB/XDR assay fill the gap for fluoroquinolone testing?
   J Clin Microbiol. 2025;63:e0064325.
   

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   September 2025
3. BRANDAO AP, Ferreira FMdA, Simeao FCdS, Ferrazoli L, et al
   Off-label evaluation of the BD MAX MDR-TB assay for rapid diagnosis of rifampicin and isoniazid resistance of Mycobacterium tuberculosis clinical isolates in a high-volume reference laboratory.
   J Clin Microbiol. 2025 Sep 23:e0091225. doi: 10.1128/jcm.00912.
   

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4. SCHUETZ AN, Ferrell A, Hindler JA, Humphries R, et al
   Overview of changes in the Clinical and Laboratory Standards Institute Performance Standards for Antimicrobial Susceptibility Testing: M100 32nd and 33rd editions.
   J Clin Microbiol. 2025;63:e0162323.
   

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5. FISCHER-WELLENBORN M, Imkamp F, Pereira Pires V, Zbinden R, et al
   Antibiotic resistance profiles of seven genomospecies of Corynebacterium jeikeium analyzed by whole genome sequencing.
   J Clin Microbiol. 2025 Sep 3:e0041825. doi: 10.1128/jcm.00418.
   

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6. SANCHEZ BC, Sayeed H, Niles DT, Dunn JJ, et al
   ?Clinical performance of a syndromic panel for direct identification of pathogens and antimicrobial resistance markers in pediatric osteoarticular and pleural space infections.
   J Clin Microbiol. 2025 Sep 2:e0062125. doi: 10.1128/jcm.00621.
   

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   August 2025
7. RAJAGOPALAN S, Das L, Kohlerschmidt DJ, Rourke AK, et al
   Luciferase reporter mycobacteriophage (TM4::GeNL) enables rapid assessment of drug susceptibilities and inducible macrolide resistance in Mycobacterium abscessus complex.
   J Clin Microbiol. 2025 Aug 20:e0084125. doi: 10.1128/jcm.00841.
   

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8. SIMNER PJ, Harris H, Jacobs E, Stambaugh H, et al
   Establishing Clinical and Laboratory Standards Institute M45 antimicrobial susceptibility testing methods and breakpoints for Pseudomonas other than Pseudomonas aeruginosa.
   J Clin Microbiol. 2025;63:e0036825.
   

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   July 2025
9. KOENIG C, Nicolau DP, Asempa T
   Sulbactam-durlobactam in combination with aztreonam and carbapenems against carbapenem-resistant Acinetobacter baumannii: an assessment using the MIC-based broth disk elution.
   J Clin Microbiol. 2025 Jul 24:e0070925. doi: 10.1128/jcm.00709.
   

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10. HARADA S, Komori K, Yukawa K, Hayama B, et al
    Genomic epidemiology and antimicrobial resistance of Corynebacterium macclintockiae, the predominant species of human pathogens within the Corynebacterium jeikeium complex.
    J Clin Microbiol. 2025 Jul 24:e0050025. doi: 10.1128/jcm.00500.
    

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11. KUTI JL, Lutgring JD, Simner PJ, Naccache SN, et al
    Point-Counterpoint: Cascade reporting-useful tool to support antimicrobial stewardship, or dangerously misleading.
    J Clin Microbiol. 2025;63:e0170824.
    

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12. PRIOR K, Becker K, Brandt C, Cabal Rosel A, et al
    Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with Nanopore sequencing data.
    J Clin Microbiol. 2025;63:e0036925.
    

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13. SIOPI M, Leventaki S, Pachoulis I, Spruijtenburg B, et al
    Evaluation of the MIC test strips for antifungal susceptibility testing of Candidozyma auris (Candida auris) using a representative international collection of isolates.
    J Clin Microbiol. 2025 Jul 3:e0039925. doi: 10.1128/jcm.00399.
    

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14. CALDERA JR, Dayo A, Wiederhold N, Yang S, et al
    Development and validation of next-generation sequencing-based clinical test for triazole resistance prediction in Aspergillus fumigatus.
    J Clin Microbiol. 2025 Jul 1:e0029125. doi: 10.1128/jcm.00291.
    

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    June 2025
15. MARBANIANG YV, Leto D, Almohri H, Hasan MR, et al
    Treatment and diagnostic challenges associated with the novel and rapidly emerging antifungal-resistant dermatophyte, Trichophyton indotineae.
    J Clin Microbiol. 2025;63:e0140724.
    

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16. HARRIS H, Stambaugh H, Jacobs E, Bhalodi A, et al
    Defining antimicrobial susceptibility testing methods and breakpoints among Achromobacter species.
    J Clin Microbiol. 2025;63:e0026425.
    

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17. TU C, Su B, Xiong Y, Xia Z, et al
    Identification and quantification of gyrA variants in fluoroquinolone-resistant Mycobacterium tuberculosis in a MeltArray reaction.
    J Clin Microbiol. 2025 Jun 3:e0014625. doi: 10.1128/jcm.00146.
    

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    May 2025
18. SMITH DJ, Melhem MSC, Dirven J, de Azevedo CMPeS, et al
    Establishment of epidemiological cutoff values for Fonsecaea pedrosoi, the primary etiologic agent of chromoblastomycosis, and eight antifungal medications.
    J Clin Microbiol. 2025;63:e0190324.
    

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19. DEMARCO MG, Field AM, Donohue LE, Cox HL, et al
    Impact of media brand on cefiderocol disk diffusion results.
    J Clin Microbiol. 2025;63:e0164824.
    

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20. SOBKOWIAK A, Schwierzeck V, van Almsick V, Scherff N, et al
    The dark matter of bacterial genomic surveillance-antimicrobial resistance plasmid transmissions in the hospital setting.
    J Clin Microbiol. 2025 May 12:e0012125. doi: 10.1128/jcm.00121.
    

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    April 2025
21. HUMPHRIES RM, Simner PJ
    Major updates to FDA-recognized Clinical and Laboratory Standards Institute breakpoints are a win for the fight against antimicrobial resistance.
    J Clin Microbiol. 2025 Apr 14:e0010625. doi: 10.1128/jcm.00106.
    

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22. JIN Q-Y, Torres RC, Yang C, He LH, et al
    Population structure of Helicobacter pylori and antibiotic resistance-associated variants in a high-risk area of gastric cancer.
    J Clin Microbiol. 2025 Apr 11:e0003325. doi: 10.1128/jcm.00033.
    

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23. DIERCKX L, Rodriguez-Ruiz JP, Ekinci E, van Heirstraeten L, et al
    Pneumococcal genotype 23B1 as a driver of increased 23B serotype carriage, penicillin non-susceptibility, and invasive disease in Belgium: a retrospective analysis.
    J Clin Microbiol. 2025;63:e0169624.
    

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24. CZECH MM, Cuellar-Rodriguez J, Kwon-Chung KJ, Stock F, et al
    Clinical significance and antifungal susceptibility profile of 103 clinical isolates of Scedosporium species complex and Lomentospora prolificans obtained from NIH patients.
    J Clin Microbiol. 2025;63:e0155024.
    

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    March 2025
25. EIGNER U, Koffer J, Betz U, Koglin J, et al
    Evaluation of the cobas MTB and MTB-RIF/INH assay in clinical samples for the detection of Mycobacterium tuberculosis in respiratory specimens.
    J Clin Microbiol. 2025 Mar 25:e0195924. doi: 10.1128/jcm.01959.
    

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26. YU S, Liu N, Xie Z, Zeng Y, et al
    Nanopore sequencing for precise detection of Mycobacterium tuberculosis and drug resistance: a retrospective multicenter study in China.
    J Clin Microbiol. 2025 Mar 19:e0181324. doi: 10.1128/jcm.01813.
    

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    February 2025
27. PEIRANO G, Pitout JDD
    Rapidly spreading Enterobacterales with OXA-48-like carbapenemases.
    J Clin Microbiol. 2025;63:e0151524.
    

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    January 2025
28. MCTAGGART LR, Cronin K, Ruscica S, Patel SN, et al
    Emergence of terbinafine-resistant Trichophyton indotineae in Ontario, Canada, 2014-2023.
    J Clin Microbiol. 2025;63:e0153524.
    

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    December 2024
29. PENVEN M, Louazon M, Freret C, Sauron A, et al
    Comparative performances of the Qvella FAST system and conventional methods for rapid identification and antibiotic susceptibility testing on monomicrobial positive blood cultures.
    J Clin Microbiol. 2024 Dec 20:e0133224. doi: 10.1128/jcm.01332.
    

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30. WINKLER ML, Rhomberg PR, Fedler KA, Huband MD, et al
    Use of voriconazole to predict susceptibility and resistance to isavuconazole for Aspergillus fumigatus using CLSI methods and interpretive criteria.
    J Clin Microbiol. 2024 Dec 20:e0120724. doi: 10.1128/jcm.01207.
    

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31. REN X, Suo B, Li C, Ping G, et al
    Comparative analysis of the detection of antibiotic genotypic resistance with gastric mucosa, gastric fluid, and fecal samples in patients with Helicobacter pylori infection.
    J Clin Microbiol. 2024 Dec 16:e0103424. doi: 10.1128/jcm.01034.
    

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32. KHODADADI RB, El Zein S, Rivera O'Connor CG, Stevens RW, et al
    Retrospective analysis of antimicrobial susceptibility profiles of non-diphtheriae Corynebacterium species from a tertiary hospital and reference laboratory, 2012-2023.
    J Clin Microbiol. 2024;62:e0119924.
    

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    November 2024
33. SABOUR S, Harrington KRV, Martinson E, Bhatnagar AS, et al
    Characterization of carbapenem-resistant Enterobacterales and Pseudomonas aeruginosa carrying multiple carbapenemase genes-Antimicrobial Resistance Laboratory Network, 2018-2022.
    J Clin Microbiol. 2024 Nov 20:e0122024. doi: 10.1128/jcm.01220.
    

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34. CHAN H-H, Wang Y-C, Jou R
    A simplified pyrazinamidase test for Mycobacterium tuberculosis pyrazinamide antimicrobial susceptibility testing.
    J Clin Microbiol. 2024 Nov 18:e0122724. doi: 10.1128/jcm.01227.
    

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35. OSTERMANN G, Korber-Irrgang B, Kruger A, Singh P, et al
    Performance evaluation of the Specific Reveal system for rapid antibiotic susceptibility testing from positive blood cultures containing Gram-negative pathogens.
    J Clin Microbiol. 2024 Nov 15:e0069224. doi: 10.1128/jcm.00692.
    

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36. VALERIO DE LIMA A, Lima KdO, Cappellano P, Cifuentes S, et al
    Evaluation of the KPC/IMP/NDM/VIM/OXA-48 Combo Test Kit and Carbapenem-Resistant K.N.I.V.O. Detection K-Set in detecting KPC variants.
    J Clin Microbiol. 2024 Nov 14:e0112324. doi: 10.1128/jcm.01123.
    

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37. YOUNG EL, Roach DJ, Martinsen MA, McGrath GEG, et al
    Clinical pilot of bacterial transcriptional profiling as a combined genotypic and phenotypic antimicrobial susceptibility test.
    J Clin Microbiol. 2024;62:e0099724.
    

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38. NG S, Tan CY, Yah JY, Osman NAB, et al
    Evaluation of the QIAstat-Dx BCID GN and GPF kits for direct identification and antimicrobial resistance prediction from blood culture bottles.
    J Clin Microbiol. 2024 Nov 6:e0116924. doi: 10.1128/jcm.01169.
    

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    October 2024
39. MCHUGH JW, Bayless DR, Ranganath N, Stevens RW, et al
    Candida guilliermondii fungemia: a 12-year retrospective review of antimicrobial susceptibility patterns at a reference laboratory and tertiary care center.
    J Clin Microbiol. 2024 Oct 23:e0105724. doi: 10.1128/jcm.01057.
    

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40. GISKE CG, Bressan M, Fiechter F, Hinic V, et al
    GPT-4-based AI agents-the new expert system for detection of antimicrobial resistance mechanisms?
    J Clin Microbiol. 2024 Oct 17:e0068924. doi: 10.1128/jcm.00689.
    

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    September 2024
41. MANUEL C, Maynard R, Simpkins S, Haro M, et al
    Evaluation of an expanded antibiotic resistance gene panel on prediction of antimicrobial susceptibility results for Gram-negative bacteria in blood cultures.
    J Clin Microbiol. 2024 Sep 19:e0102024. doi: 10.1128/jcm.01020.
    

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42. LUUKINEN B, Aittoniemi J, Miikkulainen-Lahti T, Mentula S, et al
    Evaluation of the STANDARD M10 MDR-TB and MTB/NTM assays for the detection of Mycobacterium tuberculosis, rifampicin and isoniazid resistance, and nontuberculous mycobacteria in a low-incidence setting.
    J Clin Microbiol. 2024 Sep 19:e0040224. doi: 10.1128/jcm.00402.
    

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43. CABIBBE AM, Moghaddasi K, Batignani V, Morgan GSK, et al
    Nanopore-based targeted sequencing test for direct tuberculosis identification, genotyping, and detection of drug resistance mutations: a side-by-side comparison of targeted next-generation sequencing technologies.
    J Clin Microbiol. 2024 Sep 6:e0081524. doi: 10.1128/jcm.00815.
    

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    August 2024
44. CHRISTIANS FC, Akhund-Zade J, Jarman K, Venkatasubrahmanyam S, et al
    Analytical and clinical validation of direct detection of antimicrobial resistance markers by plasma microbial cell-free DNA sequencing.
    J Clin Microbiol. 2024 Aug 28:e0042524. doi: 10.1128/jcm.00425.
    

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45. SMITH A, Wong-O'Brien B, Lieberman JA, Cookson BT, et al
    The Brief Case: A case of tinea corporis caused by drug-resistant Trichophyton indotineae identified by broad-range fungal DNA sequencing.
    J Clin Microbiol. 2024;62:e0023424.
    

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46. PARANOS P, Pournaras S, Meletiadis J
    A single-layer spot assay for easy, fast, and high-throughput quantitation of phages against multidrug-resistant Gram-negative pathogens.
    J Clin Microbiol. 2024;62:e0074324.
    

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47. WANG H
    Practical updates in clinical antiviral resistance testing.
    J Clin Microbiol. 2024;62:e0072823.
    

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    July 2024
48. OMAR SV, Louw G, Ismail F, Liu X, et al
    Performance evaluation of the Xpert MTB/XDR test for the detection of drug resistance to Mycobacterium tuberculosis among people diagnosed with tuberculosis in South Africa.
    J Clin Microbiol. 2024 Jul 26:e0022924. doi: 10.1128/jcm.00229.
    

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    June 2024
49. MOORE HP, Palumbo PJ, Notarte KI, Fogel JM, et al
    Performance of the Applied Biosystems HIV-1 Genotyping Kit with Integrase.
    J Clin Microbiol. 2024;62:e0013624.
    

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50. PEREYRE S, Henin N, Dolzy A, Guiraud J, et al
    Evaluation of commercial, customized microdilution plates for Ureaplasma parvum, Ureaplasma urealyticum, and Mycoplasma hominis antimicrobial susceptibility testing and determination of antimicrobial resistance prevalence in France.
    J Clin Microbiol. 2024 Jun 4:e0022624. doi: 10.1128/jcm.00226.
    

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    May 2024
51. SERRANO-LOBO J, Reigadas E, Munoz P, Escribano P, et al
    Azole resistance screening in Aspergillus fumigatus sensu stricto using the azole-containing agar method (EUCAST E.Def 10.2): conidial suspension filtration and inoculum adjustment before inoculum preparation may not be needed.
    J Clin Microbiol. 2024 May 31:e0036924. doi: 10.1128/jcm.00369.
    

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52. MUNSON E, Moore J, Krueger T, Zapp A, et al
    Mycoplasmoides genitalium nucleic acid semi-quantitation and molecular macrolide resistance detection via automated assays: gender and specimen source considerations.
    J Clin Microbiol. 2024 May 24:e0048524. doi: 10.1128/jcm.00485.
    

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53. FOUAD A, Simner PJ, Nicolau DP, Asempa TE, et al
    Comparison of BD Phoenix and disk diffusion to broth microdilution for determining cefepime susceptibility among carbapenem-resistant Enterobacterales.
    J Clin Microbiol. 2024 May 7:e0152023. doi: 10.1128/jcm.01520.
    

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    April 2024
54. BROWN-ELLIOTT BA, Wallace RJ Jr, Wengenack NL, Workman SD, et al
    Erratum for Brown-Elliott et al., "Emergence of Inducible Macrolide Resistance in Mycobacterium chelonae Due to Broad-Host-Range Plasmid and Chromosomal Variants of the Novel 23S rRNA Methylase Gene, erm(55)".
    J Clin Microbiol. 2024 Apr 4:e0041524. doi: 10.1128/jcm.00415.
    

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55. MCELVANIA E, Mindel S, Lemstra J, Brands K, et al
    Automated detection of methicillin-resistant Staphylococcus aureus with the MRSA CHROM imaging application on BD Kiestra Total Lab Automation System.
    J Clin Microbiol. 2024 Apr 1:e0144523. doi: 10.1128/jcm.01445.
    

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    March 2024
56. PEIRANO G, Castellanos LR, Matsumura Y, Chaffee R, et al
    Clinical validation of loop-mediated isothermal amplification for the detection of Escherichia coli sequence type complex 131.
    J Clin Microbiol. 2024;62:e0168723.
    

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    January 2024
57. MISAS E, Seagle E, Jenkins EN, Rajeev M, et al
    Genomic description of acquired fluconazole- and echinocandin-resistance in patients with serial Candida glabrata isolates.
    J Clin Microbiol. 2024 Jan 24:e0114023. doi: 10.1128/jcm.01140.
    

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58. SIOPI M, Efstathiou I, Arendrup MC, Meletiadis J, et al
    Development of an agar-based screening method for terbinafine, itraconazole, and amorolfine susceptibility testing of Trichophyton spp.
    J Clin Microbiol. 2024;62:e0130823.
    

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59. FRATONI AJ, Roberts AL, Nicolau DP, Kuti JL, et al
    Effects of clinically achievable pulmonary antibiotic concentrations on the recovery of bacteria: in vitro comparison of the BioFire FILMARRAY Pneumonia Panel versus conventional culture methods in bronchoalveolar lavage fluid.
    J Clin Microbiol. 2024;62:e0113323.
    

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60. SCHUETZ AN, Theel ES, Cole NC, Rothstein TE, et al
    Testing for Helicobacter pylori in an era of antimicrobial resistance.
    J Clin Microbiol. 2024 Jan 9:e0073223. doi: 10.1128/jcm.00732.
    

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61. PFALLER MA, Carvalhaes CG, Rhomberg PR, Desphande LM, et al
    Trends in the activity of mold-active azole agents against Aspergillus fumigatus clinical isolates with and without cyp51 alterations from Europe and North America (2017-2021).
    J Clin Microbiol. 2024 Jan 9:e0114123. doi: 10.1128/jcm.01141.
    

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    December 2023
62. LOCKHART SR, Smith DJ, Gold JAW
    Trichophyton indotineae and other terbinafine-resistant dermatophytes in North America.
    J Clin Microbiol. 2023;61:e0090323.
    

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63. MCTAGGART LR, Eshaghi A, Hota S, Poutanen SM, et al
    First Canadian report of transmission of fluconazole-resistant Candida parapsilosis within two hospital networks confirmed by genomic analysis.
    J Clin Microbiol. 2023 Dec 19:e0116123. doi: 10.1128/jcm.01161.
    

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64. PRYCE TM, Foti OR, Haygarth EJ, Whiley DM, et al
    Maximizing the Neisseria gonorrhoeae confirmatory rate and the genotypic detection of ciprofloxacin resistance for samples screened with cobas CT/NG.
    J Clin Microbiol. 2023 Dec 12:e0103923. doi: 10.1128/jcm.01039.
    

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65. FREY E, Stapleton GS, Nichols MC, Gollarza LM, et al
    Antimicrobial resistance in multistate outbreaks of nontyphoidal Salmonella infections linked to animal contact-United States, 2015-2018.
    J Clin Microbiol. 2023 Dec 12:e0098123. doi: 10.1128/jcm.00981.
    

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    November 2023
66. MOSTAFA HH
    Next-generation sequencing for cytomegalovirus genotypic antiviral resistance testing.
    J Clin Microbiol. 2023 Nov 22:e0130223. doi: 10.1128/jcm.01302.
    

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67. MALLORY MA, Hymas WC, Simmon KE, Pyne MT, et al
    Development and validation of a next-generation sequencing assay with open-access analysis software for detecting resistance-associated mutations in CMV.
    J Clin Microbiol. 2023 Nov 21:e0082923. doi: 10.1128/jcm.00829.
    

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68. BHATNAGAR AS, Machado M-J, Patterson L, Anderson K, et al
    Antimicrobial Resistance Laboratory Network's multisite evaluation of the ThermoFisher Sensititre GN7F broth microdilution panel for antimicrobial susceptibility testing.
    J Clin Microbiol. 2023 Nov 16:e0079923. doi: 10.1128/jcm.00799.
    

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    October 2023
69. DERBYSHIRE KM, Salfinger M
    Plasmid-mediated drug resistance in mycobacteria: the tip of the iceberg?
    J Clin Microbiol. 2023;61:e0062823.
    

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70. LIU B, Gao J, Liu XF, Rao G, et al
    Direct prediction of carbapenem resistance in Pseudomonas aeruginosa by whole genome sequencing and metagenomic sequencing.
    J Clin Microbiol. 2023 Oct 12:e0061723. doi: 10.1128/jcm.00617.
    

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    September 2023
71. SY I, Buhler N, Becker SL, Jung P, et al
    Evaluation of the Qvella FAST System and the FAST-PBC cartridge for rapid species identification and antimicrobial resistance testing directly from positive blood cultures.
    J Clin Microbiol. 2023 Sep 28:e0056923. doi: 10.1128/jcm.00569.
    

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72. STRECK NT, Espy MJ, Ferber MJ, Klee EW, et al
    Use of next-generation sequencing to detect mutations associated with antiviral drug resistance in cytomegalovirus.
    J Clin Microbiol. 2023 Sep 26:e0042923. doi: 10.1128/jcm.00429.
    

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