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Drug Resistance
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Articles published in
PLoS Comput Biol
    October 2023
  1. OJALA F, Sater MRA, Miller LG, McKinnell JA, et al
    Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization.
    PLoS Comput Biol. 2023;19:e1010898.
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    August 2023
  2. CZUPPON P, Day T, Debarre F, Blanquart F, et al
    A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance.
    PLoS Comput Biol. 2023;19:e1011364.
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    June 2023
  3. CHINDELEVITCH L, van Dongen M, Graz H, Pedrotta A, et al
    Ten simple rules for the sharing of bacterial genotype-Phenotype data on antimicrobial resistance.
    PLoS Comput Biol. 2023;19:e1011129.
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  4. SKALNIK CJ, Cheah SY, Yang MY, Wolff MB, et al
    Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.
    PLoS Comput Biol. 2023;19:e1011232.
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    January 2023
  5. NEWMAN KE, Khalid S
    Conformational dynamics and putative substrate extrusion pathways of the N-glycosylated outer membrane factor CmeC from Campylobacter jejuni.
    PLoS Comput Biol. 2023;19:e1010841.
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    July 2022
  6. TAO J, Wang H, Wang W, Mi N, et al
    Binding mechanism of oseltamivir and influenza neuraminidase suggests perspectives for the design of new anti-influenza drugs.
    PLoS Comput Biol. 2022;18:e1010343.
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  7. BRENNAN J, Jain L, Garman S, Donnelly AE, et al
    Sample-efficient identification of high-dimensional antibiotic synergy with a normalized diagonal sampling design.
    PLoS Comput Biol. 2022;18:e1010311.
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    March 2022
  8. PENG Z, Maciel-Guerra A, Baker M, Zhang X, et al
    Whole-genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals, humans and environment in livestock farming.
    PLoS Comput Biol. 2022;18:e1010018.
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  9. GODIJK NG, Bootsma MCJ, van Werkhoven HC, Schweitzer VA, et al
    Does plasmid-based beta-lactam resistance increase E. coli infections: Modelling addition and replacement mechanisms.
    PLoS Comput Biol. 2022;18:e1009875.
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    February 2022
  10. WANG S, Reeve SM, Holt GT, Ojewole AA, et al
    Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.
    PLoS Comput Biol. 2022;18:e1009855.
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    November 2021
  11. DUAN Q, Carmody C, Donovan B, Guy RJ, et al
    Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia.
    PLoS Comput Biol. 2021;17:e1009385.
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    October 2021
  12. JURASZ J, Baginski M, Czub J, Wieczor M, et al
    Molecular mechanism of proton-coupled ligand translocation by the bacterial efflux pump EmrE.
    PLoS Comput Biol. 2021;17:e1009454.
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    September 2021
  13. POSADA-CESPEDES S, Van Zyl G, Montazeri H, Kuipers J, et al
    Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C.
    PLoS Comput Biol. 2021;17:e1008363.
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  14. KUOSMANEN T, Cairns J, Noble R, Beerenwinkel N, et al
    Drug-induced resistance evolution necessitates less aggressive treatment.
    PLoS Comput Biol. 2021;17:e1009418.
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    August 2021
  15. BLASSEL L, Tostevin A, Villabona-Arenas CJ, Peeters M, et al
    Using machine learning and big data to explore the drug resistance landscape in HIV.
    PLoS Comput Biol. 2021;17:e1008873.
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    June 2021
  16. ESENER N, Guerra AM, Giebel K, Lea D, et al
    Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis.
    PLoS Comput Biol. 2021;17:e1009108.
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    March 2021
  17. ESPINOZA JL, Dupont CL, O'Rourke A, Beyhan S, et al
    Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach.
    PLoS Comput Biol. 2021;17:e1008857.
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    January 2021
  18. KACHALOV VN, Nguyen H, Balakrishna S, Salazar-Vizcaya L, et al
    Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level.
    PLoS Comput Biol. 2021;17:e1008446.
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  19. KAVCIC B, Tkacik G, Bollenbach T
    Minimal biophysical model of combined antibiotic action.
    PLoS Comput Biol. 2021;17:e1008529.
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