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Articles published in
PLoS Comput Biol
    May 2026
  1. RAFSANJANI MR, Dooney A, Suresh R, O'Farrell AC, et al
    DREAMER-S: Deep leaRning-Enabled Attention-based Multiple-instance approaches with Explainable Representations for Spatial biology.
    PLoS Comput Biol. 2026;22:e1013581.
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    February 2026
  2. ELIASON J, Peruzzi M, Rao A
    SHADE: A multilevel Bayesian framework for modeling directional spatial interactions in tissue microenvironments.
    PLoS Comput Biol. 2026;22:e1013930.
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    March 2025
  3. HAN X, Song K
    TphPMF: A microbiome data imputation method using hierarchical Bayesian Probabilistic Matrix Factorization.
    PLoS Comput Biol. 2025;21:e1012858.
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    February 2025
  4. SAKAI SA, Nomura R, Nagasawa S, Chi S, et al
    SpatialKNifeY (SKNY): Extending from spatial domain to surrounding area to identify microenvironment features with single-cell spatial omics data.
    PLoS Comput Biol. 2025;21:e1012854.
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  5. LAU MC, Borowsky J, Vayrynen JP, Haruki K, et al
    Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment.
    PLoS Comput Biol. 2025;21:e1012707.
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    September 2024
  6. JIANG J, Meng X, Wang Y, Zhuang Z, et al
    Effect of aberrant fructose metabolism following SARS-CoV-2 infection on colorectal cancer patients' poor prognosis.
    PLoS Comput Biol. 2024;20:e1012412.
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  7. ZEIRA R, Anavy L, Yakhini Z, Rivlin E, et al
    HIPI: Spatially resolved multiplexed protein expression inferred from H&E WSIs.
    PLoS Comput Biol. 2024;20:e1012501.
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    August 2024
  8. GUNNARSSON EB, Kim S, Choi B, Schmid JK, et al
    Understanding patient-derived tumor organoid growth through an integrated imaging and mathematical modeling framework.
    PLoS Comput Biol. 2024;20:e1012256.
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    April 2024
  9. LIU C, Xiao K, Yu C, Lei Y, et al
    A probabilistic knowledge graph for target identification.
    PLoS Comput Biol. 2024;20:e1011945.
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