September 2025
1. NOUIRA A, Azencott CA
   Sparse multitask group Lasso for genome-wide association studies.
   PLoS Comput Biol. 2025;21:e1012734.
   

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   August 2025
2. YAVUZ BR, Sahin U, Jang H, Nussinov R, et al
   Mutations in tumor signaling, metastases, and synthetic lethality establish distinct patterns.
   PLoS Comput Biol. 2025;21:e1013351.
   

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   May 2025
3. HOPFL S, Ozverin M, Nowack H, Tamas R, et al
   Integrated mathematical and experimental modeling uncovers enhanced EMT plasticity upon loss of the DLC1 tumor suppressor.
   PLoS Comput Biol. 2025;21:e1013076.
   

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   April 2025
4. NOURBAKHSH M, Zheng Y, Noor H, Chen H, et al
   Revealing cancer driver genes through integrative transcriptomic and epigenomic analyses with Moonlight.
   PLoS Comput Biol. 2025;21:e1012999.
   

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   February 2025
5. SAKAI SA, Nomura R, Nagasawa S, Chi S, et al
   SpatialKNifeY (SKNY): Extending from spatial domain to surrounding area to identify microenvironment features with single-cell spatial omics data.
   PLoS Comput Biol. 2025;21:e1012854.
   

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6. ZHAN X, Xu Q, Zheng Y, Lu G, et al
   Reliability-enhanced data cleaning in biomedical machine learning using inductive conformal prediction.
   PLoS Comput Biol. 2025;21:e1012803.
   

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   January 2025
7. SHI X, Wang X, Jin L, Halakivi-Clarke L, et al
   Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq data.
   PLoS Comput Biol. 2025;21:e1012750.
   

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   November 2024
8. HUANG HY, Zhang FW, Yu J, Xiao YH, et al
   A computational analysis of the oncogenic and anti-tumor immunity role of P4HA3 in human cancers.
   PLoS Comput Biol. 2024;20:e1012284.
   

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   October 2024
9. CHEN L, Huang ZH, Sun Y, Domaratzki M, et al
   Conditional probabilistic diffusion model driven synthetic radiogenomic applications in breast cancer.
   PLoS Comput Biol. 2024;20:e1012490.
   

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   June 2024
10. XIE X, Sinha S
    Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptomic data.
    PLoS Comput Biol. 2024;20:e1012103.
    

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11. VANDERDOES J, Marceaux C, Yokote K, Asselin-Labat ML, et al
    Using random forests to uncover the predictive power of distance-varying cell interactions in tumor microenvironments.
    PLoS Comput Biol. 2024;20:e1011361.
    

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12. DIMITRIOU NM, Flores-Torres S, Kyriakidou M, Kinsella JM, et al
    Cancer cell sedimentation in 3D cultures reveals active migration regulated by self-generated gradients and adhesion sites.
    PLoS Comput Biol. 2024;20:e1012112.
    

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13. PERRONE MC, Lerner MG, Dunworth M, Ewald AJ, et al
    Prioritizing drug targets by perturbing biological network response functions.
    PLoS Comput Biol. 2024;20:e1012195.
    

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    May 2024
14. BENZEKRY S, Mastri M, Nicolo C, Ebos JML, et al
    Machine-learning and mechanistic modeling of metastatic breast cancer after neoadjuvant treatment.
    PLoS Comput Biol. 2024;20:e1012088.
    

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