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Articles published in
PLoS Comput Biol
    April 2024
  1. PFLUG FG, Haendeler S, Esk C, Lindenhofer D, et al
    Neutral competition explains the clonal composition of neural organoids.
    PLoS Comput Biol. 2024;20:e1012054.
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    August 2023
  2. MONTES-OLIVAS S, Legge D, Lund A, Fletcher AG, et al
    In-silico and in-vitro morphometric analysis of intestinal organoids.
    PLoS Comput Biol. 2023;19:e1011386.
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    July 2023
  3. MIZUTANI A, Tan C, Sugita Y, Takada S, et al
    Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study.
    PLoS Comput Biol. 2023;19:e1011321.
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    June 2023
  4. LUO X, Wang Y, Zou Q, Xu L, et al
    Recall DNA methylation levels at low coverage sites using a CNN model in WGBS.
    PLoS Comput Biol. 2023;19:e1011205.
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    April 2023
  5. WANG Z, Natekar P, Tea C, Tamir S, et al
    MitoTNT: Mitochondrial Temporal Network Tracking for 4D live-cell fluorescence microscopy data.
    PLoS Comput Biol. 2023;19:e1011060.
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    September 2022
  6. NEWAR K, Abdulla AZ, Salari H, Fanchon E, et al
    Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells.
    PLoS Comput Biol. 2022;18:e1010450.
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  7. NOURISA J, Zeller-Plumhoff B, Willumeit-Romer R
    The osteogenetic activities of mesenchymal stem cells in response to Mg2+ ions and inflammatory cytokines: a numerical approach using fuzzy logic controllers.
    PLoS Comput Biol. 2022;18:e1010482.
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    July 2022
  8. ANGELINI E, Wang Y, Zhou JX, Qian H, et al
    A model for the intrinsic limit of cancer therapy: Duality of treatment-induced cell death and treatment-induced stemness.
    PLoS Comput Biol. 2022;18:e1010319.
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    June 2022
  9. MAHADEVAN AS, Long BL, Hu CW, Ryan DT, et al
    cytoNet: Spatiotemporal network analysis of cell communities.
    PLoS Comput Biol. 2022;18:e1009846.
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    May 2022
  10. UHL P, Lowengrub J, Komarova N, Wodarz D, et al
    Spatial dynamics of feedback and feedforward regulation in cell lineages.
    PLoS Comput Biol. 2022;18:e1010039.
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    April 2022
  11. FASSINA D, Costa CM, Longobardi S, Karabelas E, et al
    Modelling the interaction between stem cells derived cardiomyocytes patches and host myocardium to aid non-arrhythmic engineered heart tissue design.
    PLoS Comput Biol. 2022;18:e1010030.
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    January 2022
  12. DONOVAN-MAIYE RM, Brown JM, Chan CK, Ding L, et al
    A deep generative model of 3D single-cell organization.
    PLoS Comput Biol. 2022;18:e1009155.
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  13. HANDZLIK JE, Manu
    Data-driven modeling predicts gene regulatory network dynamics during the differentiation of multipotential hematopoietic progenitors.
    PLoS Comput Biol. 2022;18:e1009779.
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    November 2021
  14. JIANG Z, Generoso SF, Badia M, Payer B, et al
    A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences.
    PLoS Comput Biol. 2021;17:e1009582.
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    October 2021
  15. LEE J, Kim JS, Kim Y
    Atorvastatin-mediated rescue of cancer-related cognitive changes in combined anticancer therapies.
    PLoS Comput Biol. 2021;17:e1009457.
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  16. ZHAO B, Zhang K, Chen CS, Lejeune E, et al
    Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes.
    PLoS Comput Biol. 2021;17:e1009443.
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    September 2021
  17. KANNAN S, Farid M, Lin BL, Miyamoto M, et al
    Transcriptomic entropy benchmarks stem cell-derived cardiomyocyte maturation against endogenous tissue at single cell level.
    PLoS Comput Biol. 2021;17:e1009305.
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  18. GONZALEZ-RAMIREZ M, Ballare C, Mugianesi F, Beringer M, et al
    Differential contribution to gene expression prediction of histone modifications at enhancers or promoters.
    PLoS Comput Biol. 2021;17:e1009368.
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    August 2021
  19. JAEGER KH, Edwards AG, Giles WR, Tveito A, et al
    A computational method for identifying an optimal combination of existing drugs to repair the action potentials of SQT1 ventricular myocytes.
    PLoS Comput Biol. 2021;17:e1009233.
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    July 2021
  20. ZHU K, Cai L, Cui C, de Los Toyos JR, et al
    Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts.
    PLoS Comput Biol. 2021;17:e1009228.
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  21. COY R, Berg M, Phillips JB, Shipley RJ, et al
    Modelling-informed cell-seeded nerve repair construct designs for treating peripheral nerve injuries.
    PLoS Comput Biol. 2021;17:e1009142.
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