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Articles published in
PLoS Comput Biol
    April 2018
  1. BYRNE CM, Gantt S, Coombs D
    Effects of spatiotemporal HSV-2 lesion dynamics and antiviral treatment on the risk of HIV-1 acquisition.
    PLoS Comput Biol. 2018;14:e1006129.
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  2. YU WH, Zhao P, Draghi M, Arevalo C, et al
    Exploiting glycan topography for computational design of Env glycoprotein antigenicity.
    PLoS Comput Biol. 2018;14:e1006093.
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    March 2018
  3. GAHBAUER S, Pluhackova K, Bockmann RA
    Closely related, yet unique: Distinct homo- and heterodimerization patterns of G protein coupled chemokine receptors and their fine-tuning by cholesterol.
    PLoS Comput Biol. 2018;14:e1006062.
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  4. FRYER HR, Wolinsky SM, McLean AR
    Increased T cell trafficking as adjunct therapy for HIV-1.
    PLoS Comput Biol. 2018;14:e1006028.
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    February 2018
  5. SEVY AM, Panda S, Crowe JE Jr, Meiler J, et al
    Integrating linear optimization with structural modeling to increase HIV neutralization breadth.
    PLoS Comput Biol. 2018;14:e1005999.
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  6. GUPTA V, Dixit NM
    Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents.
    PLoS Comput Biol. 2018;14:e1006004.
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  7. NEAGU IA, Olejarz J, Freeman M, Rosenbloom DIS, et al
    Life cycle synchronization is a viral drug resistance mechanism.
    PLoS Comput Biol. 2018;14:e1005947.
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    November 2017
  8. MCCLOSKEY RM, Poon AFY
    A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation.
    PLoS Comput Biol. 2017;13:e1005868.
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    October 2017
  9. HAKE A, Pfeifer N
    Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time.
    PLoS Comput Biol. 2017;13:e1005789.
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  10. PULLER V, Neher R, Albert J
    Estimating time of HIV-1 infection from next-generation sequence diversity.
    PLoS Comput Biol. 2017;13:e1005775.
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    September 2017
  11. LIU Y, Zou X
    Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization.
    PLoS Comput Biol. 2017;13:e1005733.
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    March 2017
  12. PARK SW, Bolker BM
    Effects of contact structure on the transient evolution of HIV virulence.
    PLoS Comput Biol. 2017;13:e1005453.
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  13. RASMUSSEN DA, Kouyos R, Gunthard HF, Stadler T, et al
    Phylodynamics on local sexual contact networks.
    PLoS Comput Biol. 2017;13:e1005448.
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    February 2017
  14. BARTHA I, McLaren PJ, Brumme C, Harrigan R, et al
    Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.
    PLoS Comput Biol. 2017;13:e1005339.
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    January 2017
  15. GIARDINA F, Romero-Severson EO, Albert J, Britton T, et al
    Inference of Transmission Network Structure from HIV Phylogenetic Trees.
    PLoS Comput Biol. 2017;13:e1005316.
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  16. ABEL ZUR WIESCH P, Clarelli F, Cohen T
    Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies.
    PLoS Comput Biol. 2017;13:e1005321.
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  17. DOEKES HM, Fraser C, Lythgoe KA
    Effect of the Latent Reservoir on the Evolution of HIV at the Within- and Between-Host Levels.
    PLoS Comput Biol. 2017;13:e1005228.
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    October 2016
  18. TIAN J, Lopez CA, Derdeyn CA, Jones MS, et al
    Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein.
    PLoS Comput Biol. 2016;12:e1005094.
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    September 2016
  19. VAIDYA NK, Ribeiro RM, Perelson AS, Kumar A, et al
    Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics.
    PLoS Comput Biol. 2016;12:e1005127.
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    August 2016
  20. ROZHNOVA G, van der Loeff MF, Heijne JC, Kretzschmar ME, et al
    Impact of Heterogeneity in Sexual Behavior on Effectiveness in Reducing HIV Transmission with Test-and-Treat Strategy.
    PLoS Comput Biol. 2016;12:e1005012.
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    July 2016
  21. JOY JB, Liang RH, McCloskey RM, Nguyen T, et al
    Ancestral Reconstruction.
    PLoS Comput Biol. 2016;12:e1004763.
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    May 2016
  22. RAST LI, Rouzine IM, Rozhnova G, Bishop L, et al
    Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals.
    PLoS Comput Biol. 2016;12:e1004799.
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  23. SHENG Z, Schramm CA, Connors M, Morris L, et al
    Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection.
    PLoS Comput Biol. 2016;12:e1004940.
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