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Articles published in
PLoS Comput Biol
    October 2017
  1. HAKE A, Pfeifer N
    Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time.
    PLoS Comput Biol. 2017;13:e1005789.
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  2. PULLER V, Neher R, Albert J
    Estimating time of HIV-1 infection from next-generation sequence diversity.
    PLoS Comput Biol. 2017;13:e1005775.
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    September 2017
  3. LIU Y, Zou X
    Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization.
    PLoS Comput Biol. 2017;13:e1005733.
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    March 2017
  4. PARK SW, Bolker BM
    Effects of contact structure on the transient evolution of HIV virulence.
    PLoS Comput Biol. 2017;13:e1005453.
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  5. RASMUSSEN DA, Kouyos R, Gunthard HF, Stadler T, et al
    Phylodynamics on local sexual contact networks.
    PLoS Comput Biol. 2017;13:e1005448.
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    February 2017
  6. BARTHA I, McLaren PJ, Brumme C, Harrigan R, et al
    Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.
    PLoS Comput Biol. 2017;13:e1005339.
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    January 2017
  7. GIARDINA F, Romero-Severson EO, Albert J, Britton T, et al
    Inference of Transmission Network Structure from HIV Phylogenetic Trees.
    PLoS Comput Biol. 2017;13:e1005316.
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  8. ABEL ZUR WIESCH P, Clarelli F, Cohen T
    Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies.
    PLoS Comput Biol. 2017;13:e1005321.
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  9. DOEKES HM, Fraser C, Lythgoe KA
    Effect of the Latent Reservoir on the Evolution of HIV at the Within- and Between-Host Levels.
    PLoS Comput Biol. 2017;13:e1005228.
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    October 2016
  10. TIAN J, Lopez CA, Derdeyn CA, Jones MS, et al
    Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein.
    PLoS Comput Biol. 2016;12:e1005094.
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    September 2016
  11. VAIDYA NK, Ribeiro RM, Perelson AS, Kumar A, et al
    Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics.
    PLoS Comput Biol. 2016;12:e1005127.
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    August 2016
  12. ROZHNOVA G, van der Loeff MF, Heijne JC, Kretzschmar ME, et al
    Impact of Heterogeneity in Sexual Behavior on Effectiveness in Reducing HIV Transmission with Test-and-Treat Strategy.
    PLoS Comput Biol. 2016;12:e1005012.
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    July 2016
  13. JOY JB, Liang RH, McCloskey RM, Nguyen T, et al
    Ancestral Reconstruction.
    PLoS Comput Biol. 2016;12:e1004763.
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    May 2016
  14. RAST LI, Rouzine IM, Rozhnova G, Bishop L, et al
    Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals.
    PLoS Comput Biol. 2016;12:e1004799.
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  15. SHENG Z, Schramm CA, Connors M, Morris L, et al
    Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection.
    PLoS Comput Biol. 2016;12:e1004940.
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