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Articles published in
Proc Natl Acad Sci U S A
    September 2025
  1. LANGLOIS RA, Casanova JL
    The potential impacts of human genetics on virus emergence.
    Proc Natl Acad Sci U S A. 2025;122:e2504318122.
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  2. SNOW M, Searcy MT, Summers R, Blohm T, et al
    A reanalysis of population dynamics in the Casas Grandes region of Northern Mexico using mitochondrial DNA.
    Proc Natl Acad Sci U S A. 2025;122:e2506162122.
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  3. BENTLEY K, Statkute E, Murrell I, Fielding CA, et al
    Virion proteomics of genetically intact HCMV reveals a regulator of envelope glycoprotein composition that protects against humoral immunity.
    Proc Natl Acad Sci U S A. 2025;122:e2425622122.
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    August 2025
  4. XIE T, Lin D, Cai XD, Ma LJ, et al
    Nano-biochar regulates phage-host interactions, reducing antibiotic resistance genes in vermicomposting systems.
    Proc Natl Acad Sci U S A. 2025;122:e2511986122.
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  5. IZQUIERDO-ARANEGA G, Cuevas-Caballe C, Giannelli F, Paris JR, et al
    Pervasive and recurrent hybridization prevents inbreeding in Europe's most threatened seabird.
    Proc Natl Acad Sci U S A. 2025;122:e2427223122.
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  6. GUJRAL O, Bafna M, Alm E, Berger B, et al
    Sparse autoencoders uncover biologically interpretable features in protein language model representations.
    Proc Natl Acad Sci U S A. 2025;122:e2506316122.
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  7. LYU L, Gill M, Stott G, Subedi S, et al
    Tracing SARS-CoV-2 clusters across local scales using genomic data.
    Proc Natl Acad Sci U S A. 2025;122:e2501435122.
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  8. ZHOU N, Zhang Y, Chen PR, Fan X, et al
    Time-resolved photocatalytic proximity labeling uncovers ER proteome dynamics underlying UPR-to-apoptosis transition.
    Proc Natl Acad Sci U S A. 2025;122:e2503115122.
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  9. WANG H, Nielsen J, Zhou YJ, Lu H, et al
    Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming.
    Proc Natl Acad Sci U S A. 2025;122:e2502044122.
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  10. LASO-JADART R, Corrigan SL, Yang L, Lee SH, et al
    A genomic test of sex-biased dispersal in white sharks.
    Proc Natl Acad Sci U S A. 2025;122:e2507931122.
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  11. VAN DER HEIJDEN ESM, Nasvall K, Seixas FA, Beserra Nobre CE, et al
    Genomics of Neotropical biodiversity indicators: Two butterfly radiations with rampant chromosomal rearrangements and hybridization.
    Proc Natl Acad Sci U S A. 2025;122:e2410939122.
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  12. LEWANSKI AL, Linderoth T, Thompson G, Tringali A, et al
    Translocations contribute to population rescue in an imperiled woodpecker.
    Proc Natl Acad Sci U S A. 2025;122:e2410946122.
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  13. MUIRHEAD CA, Marti E, Shogren EH, Uy JAC, et al
    Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds.
    Proc Natl Acad Sci U S A. 2025;122:e2503746122.
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    July 2025
  14. LIU Y, Sarker AHMR, Sripa B, Tangkawattana S, et al
    A population genetic analysis of the nematode Strongyloides stercoralis in Asia shows that human infection is not a zoonosis from dogs.
    Proc Natl Acad Sci U S A. 2025;122:e2424630122.
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  15. PEHIM LIMBU S, Sturmer SL, Zahn G, Aguilar-Trigueros CA, et al
    Climate-linked biogeography of mycorrhizal fungal spore traits.
    Proc Natl Acad Sci U S A. 2025;122:e2505059122.
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  16. VASUDEVAN HN, Arang N, Sacconi Nunez M, Kennedy P, et al
    A transcriptomic, proteomic, and functional genetic atlas dissects neurofibromin function in the peripheral nervous system.
    Proc Natl Acad Sci U S A. 2025;122:e2506823122.
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  17. JIANG Y, Liu Q, Stridh P, Kockum I, et al
    Multiomics integration prioritizes potential drug targets for multiple sclerosis.
    Proc Natl Acad Sci U S A. 2025;122:e2425537122.
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  18. DELLICOUR S, Gambaro F, Jacquot M, Lequime S, et al
    Comparative performance of viral landscape phylogeography approaches.
    Proc Natl Acad Sci U S A. 2025;122:e2506743122.
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  19. SLAVOV GT, Macaya-Sanz D, DiFazio SP, Howe GT, et al
    Population structure limits the use of genomic data for predicting phenotypes and managing genetic resources in forest trees.
    Proc Natl Acad Sci U S A. 2025;122:e2425691122.
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  20. ANINTA SG, Drinkwater R, Carmagnini A, Deere NJ, et al
    The importance of small-island populations for the long-term survival of endangered large-bodied insular mammals.
    Proc Natl Acad Sci U S A. 2025;122:e2422690122.
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    June 2025
  21. ZENG W, Guo H, Liu Q, Wong WH, et al
    Improving polygenic prediction from whole-genome sequencing data by leveraging predicted epigenomic features.
    Proc Natl Acad Sci U S A. 2025;122:e2419202122.
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  22. GORELIK A, Paulo JA, Schroeter CB, Lad M, et al
    CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity.
    Proc Natl Acad Sci U S A. 2025;122:e2424985122.
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  23. KUO CL, Liu P, Drouard G, Vuoksimaa E, et al
    A proteomic signature of healthspan.
    Proc Natl Acad Sci U S A. 2025;122:e2414086122.
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  24. STEINER MC, Rice DP, Biddanda A, Ianni-Ravn MK, et al
    Study design and the sampling of deleterious rare variants in biobank-scale datasets.
    Proc Natl Acad Sci U S A. 2025;122:e2425196122.
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  25. ALVERSON AJ, Roberts WR, Ruck EC, Nakov T, et al
    Phylogenomics reveals the slow-burning fuse of diatom evolution.
    Proc Natl Acad Sci U S A. 2025;122:e2500153122.
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    May 2025
  26. YAMASHITA H, Matsumoto T, Kawashima K, Abdulla Daanaa HS, et al
    Dinucleotide preferences underlie apparent codon preference reversals in the Drosophila melanogaster lineage.
    Proc Natl Acad Sci U S A. 2025;122:e2419696122.
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  27. MARTIS S, Schwab DJ, GrandPre T
    Trait-space patterning is dictated by the tempo and mode of mutation.
    Proc Natl Acad Sci U S A. 2025;122:e2425607122.
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  28. GUSTAVSON DE, Borriello GA, Karhadkar MA, Rhee SH, et al
    Stability of general cognitive ability from infancy to adulthood: A combined twin and genomic investigation.
    Proc Natl Acad Sci U S A. 2025;122:e2426531122.
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  29. PEEK J, Bhattacharjee A, Burian J, Hsieh DC, et al
    Environmental resistome-guided development of resistance-tolerant antibiotics.
    Proc Natl Acad Sci U S A. 2025;122:e2504781122.
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  30. FRITTS RK, Ebmeier CC, Copley SD
    Transcriptomic and proteomic ramifications of segmental amplification in Escherichia coli.
    Proc Natl Acad Sci U S A. 2025;122:e2422424122.
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  31. GUPTA A, Mirarab S, Turakhia Y
    Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES.
    Proc Natl Acad Sci U S A. 2025;122:e2500553122.
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  32. JO Y, Greene TT, Chiale C, Zhang K, et al
    Genomic analysis of progenitors in viral infection implicates glucocorticoids as suppressors of plasmacytoid dendritic cell generation.
    Proc Natl Acad Sci U S A. 2025;122:e2410092122.
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    April 2025
  33. ROSENTHAL JS, Zhang D, Yin J, Long C, et al
    Molecular organization of central cholinergic synapses.
    Proc Natl Acad Sci U S A. 2025;122:e2422173122.
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  34. MCDONALD EF, Kim M, Olson JA 3rd, Meiler J, et al
    Proteostasis landscapes of cystic fibrosis variants reveal drug response vulnerability.
    Proc Natl Acad Sci U S A. 2025;122:e2418407122.
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  35. HUANG YH, Belk JA, Zhang R, Weiser NE, et al
    Unified molecular approach for spatial epigenome, transcriptome, and cell lineages.
    Proc Natl Acad Sci U S A. 2025;122:e2424070122.
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  36. ZHAO X, Liu Y, Yuan B, Cao Z, et al
    Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps.
    Proc Natl Acad Sci U S A. 2025;122:e2422292122.
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  37. SIERANT MC, Jin SC, Bilguvar K, Morton SU, et al
    Genomic analysis of 11,555 probands identifies 60 dominant congenital heart disease genes.
    Proc Natl Acad Sci U S A. 2025;122:e2420343122.
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    March 2025
  38. BLUMSTEIN M, Webster S, Hopkins R, Basler D, et al
    Genomics highlight an underestimation of phenology sensitivity to the urban heat island effect.
    Proc Natl Acad Sci U S A. 2025;122:e2408564122.
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  39. HU Z, Baer A, Hering L, de Sena Oliveira I, et al
    Conserved leucine-rich repeat proteins in the adhesive projectile slime of velvet worms.
    Proc Natl Acad Sci U S A. 2025;122:e2416282122.
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  40. ERVEN JAM, Mattiangeli V, Dreshaj M, Mullin VE, et al
    Archaeogenomic insights into commensalism and regional variation in pig management in Neolithic northwest Europe.
    Proc Natl Acad Sci U S A. 2025;122:e2410235122.
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  41. HART R, Moran NA, Ochman H
    Genomic divergence across the tree of life.
    Proc Natl Acad Sci U S A. 2025;122:e2319389122.
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  42. DICKMANDER RJ, Lenarcic EM, Sears JD, Hale AE, et al
    RNA-targeted proteomics identifies YBX1 as critical for efficient HCMV mRNA translation.
    Proc Natl Acad Sci U S A. 2025;122:e2421155122.
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    February 2025
  43. PENG Y, Wang Y, Liu Y, Fang X, et al
    The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems.
    Proc Natl Acad Sci U S A. 2025;122:e2422487122.
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    January 2025
  44. NI B, Xiao L, Lin D, Zhang TL, et al
    Increasing pesticide diversity impairs soil microbial functions.
    Proc Natl Acad Sci U S A. 2025;122:e2419917122.
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    December 2024
  45. RUPERTI F, Dzieciatkowska M, Pankey MS, Asensio CS, et al
    Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals.
    Proc Natl Acad Sci U S A. 2024;121:e2409125121.
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  46. PURNOMO GA, Kealy S, O'Connor S, Schapper A, et al
    The genetic origins and impacts of historical Papuan migrations into Wallacea.
    Proc Natl Acad Sci U S A. 2024;121:e2412355121.
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  47. SRINIVAS P, Peterson SB, Gallagher LA, Wang Y, et al
    Beyond genomics in Patescibacteria: A trove of unexplored biology packed into ultrasmall bacteria.
    Proc Natl Acad Sci U S A. 2024;121:e2419369121.
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  48. PRADA F, Haramaty L, Livnah O, Shaul R, et al
    Proteomic characterization of a foraminiferal test's organic matrix.
    Proc Natl Acad Sci U S A. 2024;121:e2417845121.
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  49. PADHI C, Field CM, Forneris CC, Olszewski D, et al
    Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member.
    Proc Natl Acad Sci U S A. 2024;121:e2409026121.
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    November 2024
  50. WAKANO JY, Aoki K
    Forward and backward modeling of cultural evolutionary processes.
    Proc Natl Acad Sci U S A. 2024;121:e2322880121.
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  51. STONE L, Lurquin PF
    A tale of two cultures: How L. Luca Cavalli-Sforza bridged the gap between science and the humanities.
    Proc Natl Acad Sci U S A. 2024;121:e2322878121.
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  52. ARMSTRONG CG, Clemente-Carvalho RBG, Turner NJ, Wickham S, et al
    Genetic differentiation and precolonial Indigenous cultivation of hazelnut (Corylus cornuta, Betulaceae) in Western North America.
    Proc Natl Acad Sci U S A. 2024;121:e2402304121.
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  53. HILLIS AL, Tamir T, Perry GE, Asara JM, et al
    Parallel phosphoproteomics and metabolomics map the global metabolic tyrosine phosphoproteome.
    Proc Natl Acad Sci U S A. 2024;121:e2413837121.
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  54. HOU C, Deng J, Wu C, Zhang J, et al
    Ultradeep O-GlcNAc proteomics reveals widespread O-GlcNAcylation on tyrosine residues of proteins.
    Proc Natl Acad Sci U S A. 2024;121:e2409501121.
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  55. BASTIDE P, Rocu P, Wirtz J, Hassler GW, et al
    Modeling the velocity of evolving lineages and predicting dispersal patterns.
    Proc Natl Acad Sci U S A. 2024;121:e2411582121.
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  56. LIPMAN DJ, Cherry JL, Strain E, Agarwala R, et al
    Genomic perspectives on foodborne illness.
    Proc Natl Acad Sci U S A. 2024;121:e2411894121.
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  57. WHEELER HB, Madrigal AA, Chaim IA
    Mapping the future of oxidative RNA damage in neurodegeneration: Rethinking the status quo with new tools.
    Proc Natl Acad Sci U S A. 2024;121:e2317860121.
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    October 2024
  58. CHOY MS, Nguyen HT, Kumar GS, Peti W, et al
    A protein phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatome.
    Proc Natl Acad Sci U S A. 2024;121:e2415383121.
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  59. LIANG K, Zhou L, Lei Q, Ruan T, et al
    Deep silicification-assisted long-term preservation of structural and genomic information across biospecies: From micro to macro.
    Proc Natl Acad Sci U S A. 2024;121:e2408273121.
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  60. GAO J, Yang J, Dong H, Tao S, et al
    The origin of methyl group in methanogen-mediated mercury methylation: From the Wolfe cycle.
    Proc Natl Acad Sci U S A. 2024;121:e2416761121.
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  61. BONNET T
    Joining forces to push past paradoxes: Combining quantitative genetics and genomics shows evolution hiding in plain sight.
    Proc Natl Acad Sci U S A. 2024;121:e2417220121.
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  62. RYCROFT JA, Giorgio RT, Sargen M, Helaine S, et al
    Tracking the progeny of bacterial persisters using a CRISPR-based genomic recorder.
    Proc Natl Acad Sci U S A. 2024;121:e2405983121.
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  63. KOSTER AK, Yarishkin O, Dubin AE, Kefauver JM, et al
    Chemical mapping of the surface interactome of PIEZO1 identifies CADM1 as a modulator of channel inactivation.
    Proc Natl Acad Sci U S A. 2024;121:e2415934121.
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  64. WANG Z, Yu H, Bao W, Qu M, et al
    Proteomic and phosphoproteomic landscape of localized prostate cancer unveils distinct molecular subtypes and insights into precision therapeutics.
    Proc Natl Acad Sci U S A. 2024;121:e2402741121.
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    September 2024
  65. ARMSTRONG EE, Mooney JA, Solari KA, Kim BY, et al
    Unraveling the genomic diversity and admixture history of captive tigers in the United States.
    Proc Natl Acad Sci U S A. 2024;121:e2402924121.
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  66. CLARAMUNT S, Braun EL, Cracraft J, Fjeldsa J, et al
    Calibrating the genomic clock of modern birds using fossils.
    Proc Natl Acad Sci U S A. 2024;121:e2405887121.
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  67. SHUVAEV S, Lachi D, Koulakov A, Zador A, et al
    Encoding innate ability through a genomic bottleneck.
    Proc Natl Acad Sci U S A. 2024;121:e2409160121.
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  68. TAIRA M, Ozato K, Harland RM, Moody SA, et al
    Igor B. Dawid (1935-2024): A pioneer of developmental and molecular biology.
    Proc Natl Acad Sci U S A. 2024;121:e2414869121.
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  69. DU JH, Chen T, Gao M, Wang J, et al
    Joint trajectory inference for single-cell genomics using deep learning with a mixture prior.
    Proc Natl Acad Sci U S A. 2024;121:e2316256121.
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  70. CAHILL R, Wang Y, Xian RP, Lee AJ, et al
    Unsupervised pattern identification in spatial gene expression atlas reveals mouse brain regions beyond established ontology.
    Proc Natl Acad Sci U S A. 2024;121:e2319804121.
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  71. BADONI S, Pasion-Uy EA, Kor S, Kim SR, et al
    Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content.
    Proc Natl Acad Sci U S A. 2024;121:e2410598121.
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  72. LAN T, Yang S, Li H, Zhang Y, et al
    Large-scale genome sequencing of giant pandas improves the understanding of population structure and future conservation initiatives.
    Proc Natl Acad Sci U S A. 2024;121:e2406343121.
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    August 2024
  73. NUNEZ JG, Paulose J, Mobius W, Beller DA, et al
    Range expansions across landscapes with quenched noise.
    Proc Natl Acad Sci U S A. 2024;121:e2411487121.
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  74. RATH SP, Gupta R, Todres E, Wang H, et al
    Mitochondrial genome copy number variation across tissues in mice and humans.
    Proc Natl Acad Sci U S A. 2024;121:e2402291121.
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    July 2024
  75. CHEN L, Chen A, Zhang XD, Saenz Robles MT, et al
    Targeted whole-genome recovery of single viral species in a complex environmental sample.
    Proc Natl Acad Sci U S A. 2024;121:e2404727121.
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  76. SOUILMI Y, Wasef S, Williams MP, Conroy G, et al
    Ancient genomes reveal over two thousand years of dingo population structure.
    Proc Natl Acad Sci U S A. 2024;121:e2407584121.
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  77. BORTEL P, Hagn G, Skos L, Bileck A, et al
    Memory effects of prior subculture may impact the quality of multiomic perturbation profiles.
    Proc Natl Acad Sci U S A. 2024;121:e2313851121.
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  78. PETROS BA
    Identifying changes in viral fitness using population genetic structure.
    Proc Natl Acad Sci U S A. 2024;121:e2410274121.
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  79. LYNCH M, Wei W, Ye Z, Pfrender M, et al
    The genome-wide signature of short-term temporal selection.
    Proc Natl Acad Sci U S A. 2024;121:e2307107121.
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  80. TRUMPFF C, Monzel AS, Sandi C, Menon V, et al
    Psychosocial experiences are associated with human brain mitochondrial biology.
    Proc Natl Acad Sci U S A. 2024;121:e2317673121.
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  81. SASSO S, Saag L, Spros R, Beneker O, et al
    Capturing the fusion of two ancestries and kinship structures in Merovingian Flanders.
    Proc Natl Acad Sci U S A. 2024;121:e2406734121.
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    June 2024
  82. SLEDZIESKI S, Kshirsagar M, Baek M, Dodhia R, et al
    Democratizing protein language models with parameter-efficient fine-tuning.
    Proc Natl Acad Sci U S A. 2024;121:e2405840121.
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  83. NAM C, Li LY, Yang Q, Ziman B, et al
    A druggable cascade links methionine metabolism to epigenomic reprogramming in squamous cell carcinoma.
    Proc Natl Acad Sci U S A. 2024;121:e2320835121.
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  84. YERMAKOVICH D, Andre M, Brucato N, Kariwiga J, et al
    Denisovan admixture facilitated environmental adaptation in Papua New Guinean populations.
    Proc Natl Acad Sci U S A. 2024;121:e2405889121.
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  85. DONKER T, Papathanassopoulos A, Ghosh H, Kociurzynski R, et al
    Estimation of SARS-CoV-2 fitness gains from genomic surveillance data without prior lineage classification.
    Proc Natl Acad Sci U S A. 2024;121:e2314262121.
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  86. TAN CH, Wang TY, Park H, Lomenick B, et al
    Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles.
    Proc Natl Acad Sci U S A. 2024;121:e2322588121.
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    May 2024
  87. HUANG S, Ran Q, Li XM, Bao X, et al
    MACSPI enables tissue-selective proteomic and interactomic analyses in multicellular organisms.
    Proc Natl Acad Sci U S A. 2024;121:e2319060121.
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  88. TEYSSONNIERE EM, Trebulle P, Muenzner J, Loegler V, et al
    Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast.
    Proc Natl Acad Sci U S A. 2024;121:e2319211121.
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  89. LAVANCHY E, Weir BS, Goudet J
    Detecting inbreeding depression in structured populations.
    Proc Natl Acad Sci U S A. 2024;121:e2315780121.
    >> Share

  90. KOBAYASHI D, Inoue Y, Suzuki R, Matsuda M, et al
    Identification and epidemiological study of an uncultured flavivirus from ticks using viral metagenomics and pseudoinfectious viral particles.
    Proc Natl Acad Sci U S A. 2024;121:e2319400121.
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    April 2024
  91. STRINGER EJ, Gruber B, Sarre SD, Wardle GM, et al
    Boom-bust population dynamics drive rapid genetic change.
    Proc Natl Acad Sci U S A. 2024;121:e2320590121.
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  92. JUSTEN HC, Easton WE, Delmore KE
    Mapping seasonal migration in a songbird hybrid zone -- heritability, genetic correlations, and genomic patterns linked to speciation.
    Proc Natl Acad Sci U S A. 2024;121:e2313442121.
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  93. ZHANG J, Cong Q, Shen J, Song L, et al
    What one genus of showy moths can say about migration, adaptation, and wing pattern.
    Proc Natl Acad Sci U S A. 2024;121:e2319726121.
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  94. HOGAN MP, Holding ML, Nystrom GS, Colston TJ, et al
    The genetic regulatory architecture and epigenomic basis for age-related changes in rattlesnake venom.
    Proc Natl Acad Sci U S A. 2024;121:e2313440121.
    >> Share

  95. SUN P, Lu Z, Wang Z, Wang S, et al
    Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family.
    Proc Natl Acad Sci U S A. 2024;121:e2313921121.
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  96. BAHARAV TZ, Tse D, Salzman J
    OASIS: An interpretable, finite-sample valid alternative to Pearson's X(2) for scientific discovery.
    Proc Natl Acad Sci U S A. 2024;121:e2304671121.
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  97. LONG BM, Matsuda Y, Moroney JV
    Algal chloroplast pyrenoids: Evidence for convergent evolution.
    Proc Natl Acad Sci U S A. 2024;121:e2402546121.
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    March 2024
  98. KEHLET-DELGADO H, Montoya AP, Jensen KT, Wendlandt CE, et al
    The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.
    Proc Natl Acad Sci U S A. 2024;121:e2311127121.
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  99. SHEINMAN M, Arndt PF, Massip F
    Modeling the mosaic structure of bacterial genomes to infer their evolutionary history.
    Proc Natl Acad Sci U S A. 2024;121:e2313367121.
    >> Share

  100. PEZZINI D, Taylor KL, Reisig DD, Fritz ML, et al
    Cross-pollination in seed-blended refuge and selection for Vip3A resistance in a lepidopteran pest as detected by genomic monitoring.
    Proc Natl Acad Sci U S A. 2024;121:e2319838121.
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  101. SCHRAIBER JG, Edge MD
    Heritability within groups is uninformative about differences among groups: Cases from behavioral, evolutionary, and statistical genetics.
    Proc Natl Acad Sci U S A. 2024;121:e2319496121.
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  102. GROH JS, Coop G
    The temporal and genomic scale of selection following hybridization.
    Proc Natl Acad Sci U S A. 2024;121:e2309168121.
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  103. BORETTO M, Geurts MH, Gandhi S, Ma Z, et al
    Epidermal growth factor receptor (EGFR) is a target of the tumor-suppressor E3 ligase FBXW7.
    Proc Natl Acad Sci U S A. 2024;121:e2309902121.
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  104. KRUEGER J, Preusse M, Oswaldo Gomez N, Frommeyer YN, et al
    tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa.
    Proc Natl Acad Sci U S A. 2024;121:e2312874121.
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  105. SIMOES LG, Peyroteo-Stjerna R, Marchand G, Bernhardsson C, et al
    Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France.
    Proc Natl Acad Sci U S A. 2024;121:e2310545121.
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  106. MOROMIZATO R, Fukuda K, Suzuki S, Motomura T, et al
    Pyrenoid proteomics reveals independent evolution of the CO(2)-concentrating organelle in chlorarachniophytes.
    Proc Natl Acad Sci U S A. 2024;121:e2318542121.
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    February 2024
  107. KEROACK CD, Elsworth B, Tennessen JA, Paul AS, et al
    Comparative chemical genomics in Babesia species identifies the alkaline phosphatase PhoD as a determinant of antiparasitic resistance.
    Proc Natl Acad Sci U S A. 2024;121:e2312987121.
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  108. LUKHTANOV VA
    Polytypic species concept and subspecies in the genomic era.
    Proc Natl Acad Sci U S A. 2024;121:e2317038121.
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  109. SIMON A, Coop G
    The contribution of gene flow, selection, and genetic drift to five thousand years of human allele frequency change.
    Proc Natl Acad Sci U S A. 2024;121:e2312377121.
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  110. NOCH EK, Palma L, Yim I, Bullen N, et al
    Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production.
    Proc Natl Acad Sci U S A. 2024;121:e2317343121.
    >> Share

  111. PHUNG TK, Berndsen K, Shastry R, Phan TLCHB, et al
    CURTAIN-A unique web-based tool for exploration and sharing of MS-based proteomics data.
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  112. YI T, Wagner G
    Malignant tumor cells engender second membrane-lined organelles for self-protection and tumor progression.
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  113. SPRINGSTEIN BL, Paulo JA, Park H, Henry K, et al
    Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics.
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  114. BAXI AB, Li J, Quach VM, Pade LR, et al
    Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer.
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    January 2024
  115. CAMACHO-MATEU J, Lampo A, Sireci M, Munoz MA, et al
    Sparse species interactions reproduce abundance correlation patterns in microbial communities.
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  116. SUTTER PA, Willis CM, Menoret A, Nicaise AM, et al
    Astrocytic TIMP-1 regulates production of Anastellin, an inhibitor of oligodendrocyte differentiation and FTY720 responses.
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  117. LI C, Wickell D, Kuo LY, Chen X, et al
    Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
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  118. ZHANG Y, Zhang H, Wu Y
    A general approach for inferring the ancestry of recent ancestors of an admixed individual.
    Proc Natl Acad Sci U S A. 2024;121:e2316242120.
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  119. YUAN J, Kitchener AC, Lackey LB, Sun T, et al
    The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.
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  120. VAUGHAN TG, Scire J, Nadeau SA, Stadler T, et al
    Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.
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    December 2023
  121. WEN J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, et al
    Genomic loci influence patterns of structural covariance in the human brain.
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  122. ZHU S, Liu J, Patel V, Zhao X, et al
    Antigen exposure reshapes chromatin architecture in central memory CD8(+) T cells and imprints enhanced recall capacity.
    Proc Natl Acad Sci U S A. 2023;120:e2313476120.
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  123. SKAAR EP
    Biogeography of the genus Staphylococci on human skin.
    Proc Natl Acad Sci U S A. 2023;120:e2318509120.
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  124. ZHONG X, Moresco JJ, Diedrich JK, Pinto AM, et al
    Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.
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  125. BLANCO-PASTOR JL
    Inclusion of highly admixed genotypes in grapevine genomic analyses leads to an equivocal reconstruction of its domestication history.
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  126. JIN L, Chen Y, Muzaffar S, Li C, et al
    Epigenetic switch reshapes epithelial progenitor cell signatures and drives inflammatory pathogenesis in hidradenitis suppurativa.
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    November 2023
  127. ESPINOZA B, Adiga A, Venkatramanan S, Warren AS, et al
    Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions.
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  128. TORRES ROBLES J, Lou HJ, Shi G, Pan PL, et al
    Linear motif specificity in signaling through p38alpha and ERK2 mitogen-activated protein kinases.
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  129. SIMMONS M, Horbelt N, Sverko T, Scoppola E, et al
    Invasive mussels fashion silk-like byssus via mechanical processing of massive horizontally acquired coiled coils.
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  130. JOGLEKAR P, Conlan S, Lee-Lin SQ, Deming C, et al
    Integrated genomic and functional analyses of human skin-associated Staphylococcus reveal extensive inter- and intra-species diversity.
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  131. HU W, Zhang R, Xu H, Li Y, et al
    CAMSAP1 role in orchestrating structure and dynamics of manchette microtubule minus-ends impacts male fertility during spermiogenesis.
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    October 2023
  132. BENEGAS G, Batra SS, Song YS
    DNA language models are powerful predictors of genome-wide variant effects.
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  133. CAO X, Kose C, Selby CP, Sancar A, et al
    In vitro DNA repair genomics using XR-seq with Escherichia coli and mammalian cell-free extracts.
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  134. MATHUR S, Mason AJ, Bradburd GS, Gibbs HL, et al
    Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake.
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  135. XIE Y, Ersan S, Guan X, Wang J, et al
    Unexpected metabolic rewiring of CO(2) fixation in H(2)-mediated materials-biology hybrids.
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  136. LIAO SE, Sudarshan M, Regev O
    Deciphering RNA splicing logic with interpretable machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2221165120.
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  137. DUFRESNES C, Poyarkov N, Jablonski D
    Acknowledging more biodiversity without more species.
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  138. GU TT, Wu H, Yang F, Gaubert P, et al
    Genomic analysis reveals a cryptic pangolin species.
    Proc Natl Acad Sci U S A. 2023;120:e2304096120.
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    September 2023
  139. ROTHMAN JE
    Starting at Go: Protein structure prediction succumbs to machine learning.
    Proc Natl Acad Sci U S A. 2023;120:e2311128120.
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  140. MASON FM, Kounlavong ES, Tebeje AT, Dahiya R, et al
    SETD2 safeguards the genome against isochromosome formation.
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  141. SIRECI M, Munoz MA, Grilli J
    Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.
    Proc Natl Acad Sci U S A. 2023;120:e2217144120.
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  142. OH DH, Ma X, Hogg SJ, He J, et al
    Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.
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  143. TAKAKURA M, Lam YH, Nakagawa R, Ng MY, et al
    Differential second messenger signaling via dopamine neurons bidirectionally regulates memory retention.
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    August 2023
  144. TAN R, Hoare M, Welle KA, Swovick K, et al
    Folding stabilities of ribosome-bound nascent polypeptides probed by mass spectrometry.
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  145. ZELLER MA, Ma J, Wong FY, Tum S, et al
    The genomic landscape of swine influenza A viruses in Southeast Asia.
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  146. MANGIOLA S, Roth-Schulze AJ, Trussart M, Zozaya-Valdes E, et al
    sccomp: Robust differential composition and variability analysis for single-cell data.
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  147. HUNG TH, So T, Thammavong B, Chamchumroon V, et al
    Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.
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  148. MEHROTRA T, Konar D, Pragasam AK, Kumar S, et al
    Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis.
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  149. RUBINA A, Patel M, Nightingale K, Potts M, et al
    ADAM17 targeting by human cytomegalovirus remodels the cell surface proteome to simultaneously regulate multiple immune pathways.
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  150. MALINVERNI D, Zamuner S, Rebeaud ME, Barducci A, et al
    Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins.
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    July 2023
  151. FOKKENS L, Rep M
    Population genomics reveals meiotic recombination in Fusarium oxysporum.
    Proc Natl Acad Sci U S A. 2023;120:e2309677120.
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  152. DAVIDI L, Gallaher SD, Ben-David E, Purvine SO, et al
    Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management.
    Proc Natl Acad Sci U S A. 2023;120:e2305495120.
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  153. CHARLES OJ, Venturini C, Gantt S, Atkinson C, et al
    Genomic and geographical structure of human cytomegalovirus.
    Proc Natl Acad Sci U S A. 2023;120:e2221797120.
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  154. FUJIMURA T, Esteban R, Wickner RB
    Genomic fold of a "naked" ssRNA virus is critical for stability and propagation.
    Proc Natl Acad Sci U S A. 2023;120:e2309329120.
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  155. GU Z, Wang L, Dong Q, Xu K, et al
    Aberrant LYZ expression in tumor cells serves as the potential biomarker and target for HCC and promotes tumor progression via csGRP78.
    Proc Natl Acad Sci U S A. 2023;120:e2215744120.
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  156. GARDNER EM, Bruun-Lund S, Niissalo M, Chantarasuwan B, et al
    Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs.
    Proc Natl Acad Sci U S A. 2023;120:e2222035120.
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  157. VARGAS R JR, Luna MJ, Freschi L, Marin M, et al
    Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex.
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  158. SARTORIO MG, Pardue EJ, Scott NE, Feldman MF, et al
    Human gut bacteria tailor extracellular vesicle cargo for the breakdown of diet- and host-derived glycans.
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  159. FAYYAZ A, Robinson G, Chang PL, Bekele D, et al
    Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in Fusarium oxysporum f.sp. ciceris.
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    June 2023
  160. HASEGAWA N, Techer MA, Adjlane N, Al-Hissnawi MS, et al
    Evolutionarily diverse origins of deformed wing viruses in western honey bees.
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  161. NOSIL P, Soria-Carrasco V, Villoutreix R, De-la-Mora M, et al
    Complex evolutionary processes maintain an ancient chromosomal inversion.
    Proc Natl Acad Sci U S A. 2023;120:e2300673120.
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  162. HARRISON LB, Behr MA
    Mutation rates and the molecular epidemiology of Mycobacterium abscessus.
    Proc Natl Acad Sci U S A. 2023;120:e2307499120.
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  163. GOMEZ-BAENA G, Pounder KC, Halstead JO, Roberts SA, et al
    Unraveling female communication through scent marks in the Norway rat.
    Proc Natl Acad Sci U S A. 2023;120:e2300794120.
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  164. KASUGA Y, Ouda R, Watanabe M, Sun X, et al
    FBXO11 constitutes a major negative regulator of MHC class II through ubiquitin-dependent proteasomal degradation of CIITA.
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  165. XIAO H, Liu Z, Wang N, Long Q, et al
    Adaptive and maladaptive introgression in grapevine domestication.
    Proc Natl Acad Sci U S A. 2023;120:e2222041120.
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  166. YOUNIS S, Jouneau A, Larsson M, Oudin JF, et al
    Ablation of ZC3H11A causes early embryonic lethality and dysregulation of metabolic processes.
    Proc Natl Acad Sci U S A. 2023;120:e2216799120.
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    May 2023
  167. SHIRAKAWA KT, Sala FA, Miyachiro MM, Job V, et al
    Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex.
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  168. GOYCHUK A, Kannan D, Chakraborty AK, Kardar M, et al
    Polymer folding through active processes recreates features of genome organization.
    Proc Natl Acad Sci U S A. 2023;120:e2221726120.
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  169. MELBY JA, Brown KA, Gregorich ZR, Roberts DS, et al
    High sensitivity top-down proteomics captures single muscle cell heterogeneity in large proteoforms.
    Proc Natl Acad Sci U S A. 2023;120:e2222081120.
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  170. REITZ CJ, Tavassoli M, Kim DH, Shah S, et al
    Proteomics and phosphoproteomics of failing human left ventricle identifies dilated cardiomyopathy-associated phosphorylation of CTNNA3.
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  171. SEXTON DL, Hashimi A, Beskrovnaya P, Sibanda L, et al
    The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis.
    Proc Natl Acad Sci U S A. 2023;120:e2303275120.
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    April 2023
  172. BARTOLEC TK, Vazquez-Campos X, Norman A, Luong C, et al
    Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell.
    Proc Natl Acad Sci U S A. 2023;120:e2219418120.
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  173. WANG YJ, Tain T, Yu JY, Li J, et al
    Genomic and structural basis for evolution of tropane alkaloid biosynthesis.
    Proc Natl Acad Sci U S A. 2023;120:e2302448120.
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  174. LLEWELLYN J, Mallikarjun V, Appleton E, Osipova M, et al
    Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells.
    Proc Natl Acad Sci U S A. 2023;120:e2210745120.
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  175. GESESSE CA, Nigir B, de Sousa K, Gianfranceschi L, et al
    Genomics-driven breeding for local adaptation of durum wheat is enhanced by farmers' traditional knowledge.
    Proc Natl Acad Sci U S A. 2023;120:e2205774119.
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  176. HUANG K, Jahani M, Gouzy J, Legendre A, et al
    The genomics of linkage drag in inbred lines of sunflower.
    Proc Natl Acad Sci U S A. 2023;120:e2205783119.
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  177. SANCHEZ D, Sadoun SB, Mary-Huard T, Allier A, et al
    Improving the use of plant genetic resources to sustain breeding programs' efficiency.
    Proc Natl Acad Sci U S A. 2023;120:e2205780119.
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    March 2023
  178. LATRILLE T, Rodrigue N, Lartillot N
    Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
    Proc Natl Acad Sci U S A. 2023;120:e2214977120.
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    February 2023
  179. SCHMID C, Schiffels S
    Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data.
    Proc Natl Acad Sci U S A. 2023;120:e2218375120.
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