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Articles published in
PLoS Genet
    September 2025
  1. SHASTRY V, Musiani M, Novembre J
    Jointly representing long-range genetic similarity and spatially heterogeneous isolation-by-distance.
    PLoS Genet. 2025;21:e1011612.
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    August 2025
  2. LYU Z, Si G, Xing M, Li W, et al
    Circulating proteins associated with histological subtypes of lung cancer from genetic and population-based perspectives.
    PLoS Genet. 2025;21:e1011821.
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  3. OLLIVIER L, Charlesworth B, Pouyet F
    Beyond recombination: Exploring the impact of meiotic frequency on genome-wide genetic diversity.
    PLoS Genet. 2025;21:e1011798.
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    July 2025
  4. FINE AG, Steinrucken M
    A novel expectation-maximization approach to infer general diploid selection from time-series genetic data.
    PLoS Genet. 2025;21:e1011769.
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    June 2025
  5. ISSHIKI M, Griffen AJ, Meissner P, Spencer P, et al
    Genetic disease risks of under-represented founder populations in New York City.
    PLoS Genet. 2025;21:e1011755.
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    April 2025
  6. EBDON S, Laetsch DR, Vila R, Baird SJE, et al
    Genomic regions of current low hybridisation mark long-term barriers to gene flow in scarce swallowtail butterflies.
    PLoS Genet. 2025;21:e1011655.
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  7. CAI W, Cole JB, Goddard ME, Li J, et al
    Mammary gland multi-omics data reveals new genetic insights into milk production traits in dairy cattle.
    PLoS Genet. 2025;21:e1011675.
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  8. HEY J, Pavinato VAC
    Isolating selective from non-selective forces using site frequency ratios.
    PLoS Genet. 2025;21:e1011427.
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    March 2025
  9. GETZ LJ, Robinson OS, Thomas NA
    Functional genomics of chitin degradation by Vibrio parahaemolyticus reveals finely integrated metabolic contributions to support environmental fitness.
    PLoS Genet. 2025;21:e1011370.
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  10. RAGSDALE AP
    Archaic introgression and the distribution of shared variation under stabilizing selection.
    PLoS Genet. 2025;21:e1011623.
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  11. LECOQUIERRE F, Drouot N, Coutant S, Quenez O, et al
    Parental germline mosaicism in genome-wide phased de novo variants: Recurrence risk assessment and implications for precision genetic counselling.
    PLoS Genet. 2025;21:e1011651.
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  12. FARNITANO MC, Karoly K, Sweigart AL
    Fluctuating reproductive isolation and stable ancestry structure in a fine-scaled mosaic of hybridizing Mimulus monkeyflowers.
    PLoS Genet. 2025;21:e1011624.
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  13. TRAN JS, Ward RD, Iruegas-Lopez R, Ebersberger I, et al
    Chemical genomics informs antibiotic and essential gene function in Acinetobacter baumannii.
    PLoS Genet. 2025;21:e1011642.
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    January 2025
  14. HUANG Z, Kelleher J, Chan YB, Balding D, et al
    Estimating evolutionary and demographic parameters via ARG-derived IBD.
    PLoS Genet. 2025;21:e1011537.
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    December 2024
  15. AMEZQUITA J, Desbois M, Opperman KJ, Pak JS, et al
    Integrin adhesome axis inhibits the RPM-1 ubiquitin ligase signaling hub to regulate growth cone and axon development.
    PLoS Genet. 2024;20:e1011496.
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  16. OMKAR S, Mitchem MM, Hoskins JR, Shrader C, et al
    Acetylation of the yeast Hsp40 chaperone protein Ydj1 fine-tunes proteostasis and translational fidelity.
    PLoS Genet. 2024;20:e1011338.
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  17. HASAN A, Whitlock MC
    FST and genetic diversity in an island model with background selection.
    PLoS Genet. 2024;20:e1011225.
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  18. HAASL RJ, Payseur BA
    Fitness landscapes of human microsatellites.
    PLoS Genet. 2024;20:e1011524.
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    November 2024
  19. XU Z, Wei P
    A novel statistical framework for meta-analysis of total mediation effect with high-dimensional omics mediators in large-scale genomic consortia.
    PLoS Genet. 2024;20:e1011483.
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    October 2024
  20. SKIADAS P, Riera Vidal S, Dommisse J, Mendel MN, et al
    Pangenome graph analysis reveals extensive effector copy-number variation in spinach downy mildew.
    PLoS Genet. 2024;20:e1011452.
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  21. FU S, Wheeler W, Wang X, Hua X, et al
    A comprehensive framework for trans-ancestry pathway analysis using GWAS summary data from diverse populations.
    PLoS Genet. 2024;20:e1011322.
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    September 2024
  22. KYRIAZIS CC, Lohmueller KE
    Constraining models of dominance for nonsynonymous mutations in the human genome.
    PLoS Genet. 2024;20:e1011198.
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    August 2024
  23. SHOGREN EH, Sardell JM, Muirhead CA, Marti E, et al
    Recent secondary contact, genome-wide admixture, and asymmetric introgression of neo-sex chromosomes between two Pacific island bird species.
    PLoS Genet. 2024;20:e1011360.
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  24. CRONE B, Boyle AP
    Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integration.
    PLoS Genet. 2024;20:e1011356.
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    July 2024
  25. RUEDA-M N, Pardo-Diaz C, Montejo-Kovacevich G, McMillan WO, et al
    Genomic evidence reveals three W-autosome fusions in Heliconius butterflies.
    PLoS Genet. 2024;20:e1011318.
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  26. GUTIERREZ-GUERRERO YT, Phifer-Rixey M, Nachman MW
    Across two continents: The genomic basis of environmental adaptation in house mice (Mus musculus domesticus) from the Americas.
    PLoS Genet. 2024;20:e1011036.
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  27. WERTENBROEK R, Hofmeister RJ, Xenarios I, Thoma Y, et al
    Improving population scale statistical phasing with whole-genome sequencing data.
    PLoS Genet. 2024;20:e1011092.
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    June 2024
  28. DAVISON C, Tallman S, de Ste-Croix M, Antonio M, et al
    Long-term evolution of Streptococcus mitis and Streptococcus pneumoniae leads to higher genetic diversity within rather than between human populations.
    PLoS Genet. 2024;20:e1011317.
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    April 2024
  29. CHO A, Lax G, Livingston SJ, Masukagami Y, et al
    Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but does reveal the presence of giant viruses.
    PLoS Genet. 2024;20:e1011218.
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  30. DUMONT BL, Gatti DM, Ballinger MA, Lin D, et al
    Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models.
    PLoS Genet. 2024;20:e1011228.
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  31. GUNN S, Lunetta KL
    Correlation-based tests for the formal comparison of polygenic scores in multiple populations.
    PLoS Genet. 2024;20:e1011249.
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  32. MOORE MP, Laager M, Ribeca P, Didelot X, et al
    KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.
    PLoS Genet. 2024;20:e1011184.
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    March 2024
  33. WARD CM, Onetto CA, Van Den Heuvel S, Cuijvers KM, et al
    Recombination, admixture and genome instability shape the genomic landscape of Saccharomyces cerevisiae derived from spontaneous grape ferments.
    PLoS Genet. 2024;20:e1011223.
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  34. LUO Z, McTaggart A, Schwessinger B
    Genome biology and evolution of mating-type loci in four cereal rust fungi.
    PLoS Genet. 2024;20:e1011207.
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    February 2024
  35. RIVAS-GONZALEZ I, Schierup MH, Wakeley J, Hobolth A, et al
    TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting.
    PLoS Genet. 2024;20:e1010836.
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  36. RAY DD, Flagel L, Schrider DR
    IntroUNET: Identifying introgressed alleles via semantic segmentation.
    PLoS Genet. 2024;20:e1010657.
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    January 2024
  37. ZHANG QX, Liu T, Guo X, Zhen J, et al
    Searching across-cohort relatives in 54,092 GWAS samples via encrypted genotype regression.
    PLoS Genet. 2024;20:e1011037.
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  38. LEWANSKI AL, Grundler MC, Bradburd GS
    The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics.
    PLoS Genet. 2024;20:e1011110.
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    December 2023
  39. NOVAK LVF, Treitli SC, Pyrih J, Halakuc P, et al
    Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria.
    PLoS Genet. 2023;19:e1011050.
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  40. KAWAI Y, Watanabe Y, Omae Y, Miyahara R, et al
    Exploring the genetic diversity of the Japanese population: Insights from a large-scale whole genome sequencing analysis.
    PLoS Genet. 2023;19:e1010625.
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  41. LEGRAND C, Andriantsoa R, Lichter P, Raddatz G, et al
    Time-resolved, integrated analysis of clonally evolving genomes.
    PLoS Genet. 2023;19:e1011085.
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  42. WANG D, Perera D, He J, Cao C, et al
    cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions.
    PLoS Genet. 2023;19:e1011074.
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  43. MUNASINGHE M, Read A, Stitzer MC, Song B, et al
    Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.
    PLoS Genet. 2023;19:e1011086.
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    November 2023
  44. MO Z, Siepel A
    Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data.
    PLoS Genet. 2023;19:e1011032.
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  45. MAROM R, Zhang B, Washington ME, Song IW, et al
    Dominant negative variants in KIF5B cause osteogenesis imperfecta via down regulation of mTOR signaling.
    PLoS Genet. 2023;19:e1011005.
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  46. AYALA NM, Genetti M, Corbett-Detig R
    Inferring multi-locus selection in admixed populations.
    PLoS Genet. 2023;19:e1011062.
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  47. GOUDET J, Weir BS
    An allele-sharing, moment-based estimator of global, population-specific and population-pair FST under a general model of population structure.
    PLoS Genet. 2023;19:e1010871.
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  48. MICHEL JC, Grivette MMB, Harshfield AT, Huynh L, et al
    Electrical synapse structure requires distinct isoforms of a postsynaptic scaffold.
    PLoS Genet. 2023;19:e1011045.
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    October 2023
  49. MOCCI E, Ward K, Perry JA, Starkweather A, et al
    Genome wide association joint analysis reveals 99 risk loci for pain susceptibility and pleiotropic relationships with psychiatric, metabolic, and immunological traits.
    PLoS Genet. 2023;19:e1010977.
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  50. RADULESCU E, Chen Q, Pergola G, Di Carlo P, et al
    Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia.
    PLoS Genet. 2023;19:e1010989.
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  51. AUBIN E, Llauro C, Garrigue J, Mirouze M, et al
    Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants.
    PLoS Genet. 2023;19:e1010964.
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  52. CAURET CMS, Jordan DC, Kukoly LM, Burton SR, et al
    Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis.
    PLoS Genet. 2023;19:e1010990.
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  53. WULFRIDGE P, Davidovich A, Salvador AC, Manno GC, et al
    Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation.
    PLoS Genet. 2023;19:e1010997.
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    September 2023
  54. WEN X, Feng K, Qin J, Wei P, et al
    A detoxification pathway initiated by a nuclear receptor TcHR96h in Tetranychus cinnabarinus (Boisduval).
    PLoS Genet. 2023;19:e1010911.
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  55. ROCA-UMBERT A, Garcia-Calleja J, Vogel-Gonzalez M, Fierro-Villegas A, et al
    Human genetic adaptation related to cellular zinc homeostasis.
    PLoS Genet. 2023;19:e1010950.
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    August 2023
  56. TETERINA AA, Willis JH, Lukac M, Jovelin R, et al
    Genomic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes.
    PLoS Genet. 2023;19:e1010879.
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    July 2023
  57. WAGNER ER, Nightingale NM, Jen A, Overmyer KA, et al
    PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae.
    PLoS Genet. 2023;19:e1010593.
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    June 2023
  58. NAKANO S, Kashio S, Nishimura K, Takeishi A, et al
    Damage sensing mediated by serine proteases Hayan and Persephone for Toll pathway activation in apoptosis-deficient flies.
    PLoS Genet. 2023;19:e1010761.
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  59. BRISEVAC D, Prakash C, Kaiser TS
    Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock.
    PLoS Genet. 2023;19:e1010763.
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  60. SUN B, Kim H, Mello CC, Priess JR, et al
    The CERV protein of Cer1, a C. elegans LTR retrotransposon, is required for nuclear export of viral genomic RNA and can form giant nuclear rods.
    PLoS Genet. 2023;19:e1010804.
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  61. VEDANAYAGAM J, Lin CJ, Papareddy R, Nodine M, et al
    Regulatory logic of endogenous RNAi in silencing de novo genomic conflicts.
    PLoS Genet. 2023;19:e1010787.
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  62. MIAO Y, Zhao Y, Wan S, Mei Q, et al
    Integrated analysis of genome-wide association studies and 3D epigenomic characteristics reveal the BMP2 gene regulating loin muscle depth in Yorkshire pigs.
    PLoS Genet. 2023;19:e1010820.
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  63. WANG N, Cao S, Liu Z, Xiao H, et al
    Genomic conservation of crop wild relatives: A case study of citrus.
    PLoS Genet. 2023;19:e1010811.
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    May 2023
  64. PISUPATI R, Nizhynska V, Molla Morales A, Nordborg M, et al
    On the causes of gene-body methylation variation in Arabidopsis thaliana.
    PLoS Genet. 2023;19:e1010728.
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  65. JIANG MZ, Aguet F, Ardlie K, Chen J, et al
    Canonical correlation analysis for multi-omics: Application to cross-cohort analysis.
    PLoS Genet. 2023;19:e1010517.
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    April 2023
  66. KOPPES EA, Johnson MA, Moresco JJ, Luppi P, et al
    Insulin secretion deficits in a Prader-Willi syndrome beta-cell model are associated with a concerted downregulation of multiple endoplasmic reticulum chaperones.
    PLoS Genet. 2023;19:e1010710.
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  67. BRUAL T, Effantin G, Baltenneck J, Attaiech L, et al
    A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria.
    PLoS Genet. 2023;19:e1010725.
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    March 2023
  68. SLABODNICK MM, Tintori SC, Prakash M, Zhang P, et al
    Zyxin contributes to coupling between cell junctions and contractile actomyosin networks during apical constriction.
    PLoS Genet. 2023;19:e1010319.
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  69. ONETTO CA, Kutyna DR, Kolouchova R, McCarthy J, et al
    SO2 and copper tolerance exhibit an evolutionary trade-off in Saccharomyces cerevisiae.
    PLoS Genet. 2023;19:e1010692.
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  70. KRISHNAN S, DeMaere MZ, Beck D, Ostrowski M, et al
    Rhometa: Population recombination rate estimation from metagenomic read datasets.
    PLoS Genet. 2023;19:e1010683.
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    February 2023
  71. XU L, Wang X, Lu X, Liang F, et al
    Long-read sequencing identifies novel structural variations in colorectal cancer.
    PLoS Genet. 2023;19:e1010514.
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  72. NIELSEN SV, Vaughn AH, Leppala K, Landis MJ, et al
    Bayesian inference of admixture graphs on Native American and Arctic populations.
    PLoS Genet. 2023;19:e1010410.
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